RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 SNAI1O95863 264 aaPredicted RBP20.17■□□□□ 0.82
USE1-208ENST00000600970 PANK1Q8TE04 598 aa20.17■□□□□ 0.82
USE1-208ENST00000600970 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.17■□□□□ 0.82
USE1-208ENST00000600970 BCL11AQ9H165 835 aa20.17■□□□□ 0.82
USE1-208ENST00000600970 BOLA2Q9H3K6 86 aa20.17■□□□□ 0.82
USE1-208ENST00000600970 TBX21Q9UL17 535 aa20.17■□□□□ 0.82
USE1-208ENST00000600970 SYNGAP1Q96PV0 1343 aa20.17■□□□□ 0.82
USE1-208ENST00000600970 MYADML2A6NDP7 307 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 TJAP1Q5JTD0 557 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 CTR9Q6PD62 1173 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 MAMDC4Q6UXC1 1216 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 TIFAQ96CG3 184 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.16■□□□□ 0.82
USE1-208ENST00000600970 RIPK3Q9Y572 518 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 ZBED9Q6R2W3 1325 aa20.16■□□□□ 0.82
USE1-208ENST00000600970 MUC3AQ02505 3323 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 DNAJC25-GNG10A0A024R161 153 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 DUSP11O75319 330 aaKnown RBP20.15■□□□□ 0.82
USE1-208ENST00000600970 IRX5P78411 483 aaPredicted RBP20.15■□□□□ 0.82
USE1-208ENST00000600970 SNRNP48Q6IEG0 339 aaKnown RBP20.15■□□□□ 0.82
USE1-208ENST00000600970 MFSD5Q6N075 450 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 DDX11Q96FC9 970 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 DDRGK1Q96HY6 314 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 NUP88Q99567 741 aaPredicted RBP20.15■□□□□ 0.82
USE1-208ENST00000600970 SLF1Q9BQI6 1058 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 TEX13BQ9BXU2 312 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.15■□□□□ 0.82
USE1-208ENST00000600970 ZHX1Q9UKY1 873 aaPredicted RBP20.15■□□□□ 0.82
USE1-208ENST00000600970 SLC4A4Q9Y6R1 1079 aa20.15■□□□□ 0.82
USE1-208ENST00000600970 ELP1O95163 1332 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 MROH7Q68CQ1 1323 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 ATP5JP18859 108 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 CST5P28325 142 aaPredicted RBP20.14■□□□□ 0.81
USE1-208ENST00000600970 CDK7P50613 346 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 UBE3CQ15386 1083 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 TMEM240Q5SV17 173 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 C16orf59Q7L2K0 433 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 GLT1D1Q96MS3 346 aa20.14■□□□□ 0.81
USE1-208ENST00000600970 ADCY6O43306 1168 aa20.13■□□□□ 0.81
USE1-208ENST00000600970 ASGR1P07306 291 aa20.13■□□□□ 0.81
USE1-208ENST00000600970 PBX2P40425 430 aa20.13■□□□□ 0.81
USE1-208ENST00000600970 PPIGQ13427 754 aaKnown RBP eCLIP20.13■□□□□ 0.818e-6■■■■□ 22.7
USE1-208ENST00000600970 ZNF467Q7Z7K2 595 aaPredicted RBP20.13■□□□□ 0.81
USE1-208ENST00000600970 SIRT2Q8IXJ6 389 aa20.13■□□□□ 0.81
USE1-208ENST00000600970 HAUS7Q99871 368 aa20.13■□□□□ 0.81
USE1-208ENST00000600970 MCM3APO60318 1980 aa20.13■□□□□ 0.81
USE1-208ENST00000600970 MYH4Q9Y623 1939 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 GRXCR1A8MXD5 290 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 TNFRSF10AO00220 468 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 C6orf222P0C671 652 aaPredicted RBP20.12■□□□□ 0.81
USE1-208ENST00000600970 ACVR2BQ13705 512 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 RASIP1Q5U651 963 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 RPAP2Q8IXW5 612 aaPredicted RBP20.12■□□□□ 0.81
USE1-208ENST00000600970 PRPF38AQ8NAV1 312 aaKnown RBP20.12■□□□□ 0.81
USE1-208ENST00000600970 PCSK9Q8NBP7 692 aaKnown RBP20.12■□□□□ 0.81
USE1-208ENST00000600970 PBX4Q9BYU1 374 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 PUS7LQ9H0K6 701 aaKnown RBP20.12■□□□□ 0.81
USE1-208ENST00000600970 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.12■□□□□ 0.81
USE1-208ENST00000600970 NYAP2Q9P242 653 aa20.12■□□□□ 0.81
USE1-208ENST00000600970 F5H6K3 240 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 ATP2A1O14983 1001 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 RAB11FIP3O75154 756 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 NDUFB10O96000 172 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 CSF2RAP15509 400 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 SLC4A3P48751 1232 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 KLRC3Q07444 240 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 CCDC174Q6PII3 467 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 CCDC129Q6ZRS4 1044 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 CPXCR1Q8N123 301 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 VTI1AQ96AJ9 217 aa20.11■□□□□ 0.81
USE1-208ENST00000600970 GAS2L1Q99501 681 aaPredicted RBP20.11■□□□□ 0.81
USE1-208ENST00000600970 UPF3AQ9H1J1 476 aaKnown RBP20.11■□□□□ 0.81
USE1-208ENST00000600970 ARPP21Q9UBL0 812 aaPredicted RBP20.11■□□□□ 0.81
USE1-208ENST00000600970 ARVCFO00192 962 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 HMMRO75330 724 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 RASA1P20936 1047 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 GJA9P57773 515 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 CCDC144BQ3MJ40 725 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.1■□□□□ 0.81
USE1-208ENST00000600970 STK11IPQ8N1F8 1099 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 TMEM199Q8N511 208 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 PPM1EQ8WY54 764 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 FGD4Q96M96 766 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 ABHD16BQ9H3Z7 469 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 PRDM12Q9H4Q4 367 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 SPC25Q9HBM1 224 aa20.1■□□□□ 0.81
USE1-208ENST00000600970 GBF1Q92538 1859 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 A0A0U1RQG5 324 aaPredicted RBP20.09■□□□□ 0.81
USE1-208ENST00000600970 ZBED4O75132 1171 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 ACRP10323 421 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 SBK1Q52WX2 424 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 ZNF365Q70YC5 407 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 FAM126BQ8IXS8 530 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 PPP1R12CQ9BZL4 782 aa20.09■□□□□ 0.81
USE1-208ENST00000600970 RAVER2Q9HCJ3 691 aaKnown RBP20.09■□□□□ 0.81
USE1-208ENST00000600970 COL9A1P20849 921 aa20.08■□□□□ 0.81
USE1-208ENST00000600970 HNRNPUQ00839 825 aaKnown RBP eCLIP20.08■□□□□ 0.81
USE1-208ENST00000600970 GNASQ5JWF2 1037 aa20.08■□□□□ 0.81
USE1-208ENST00000600970 AKNAD1Q5T1N1 836 aa20.08■□□□□ 0.81
USE1-208ENST00000600970 ZSCAN25Q6NSZ9 544 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms