RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 GRB14Q14449 540 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 COG2Q14746 738 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 TSGA10IPQ3SY00 556 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 TJAP1Q5JTD0 557 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 CCAR1Q8IX12 1150 aaKnown RBP10.37□□□□□ -0.75
TRIM28-214ENST00000600840 ATG4CQ96DT6 458 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 IL17RAQ96F46 866 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 APBA2Q99767 749 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 TANGO6Q9C0B7 1094 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 VCPKMTQ9H867 229 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 FBXO28Q9NVF7 368 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 SWAP70Q9UH65 585 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 ROBO3Q96MS0 1386 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 ERCC3P19447 782 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 RASA1P20936 1047 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 HSPA4P34932 840 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 RTP1P59025 263 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 CCNA1P78396 465 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 SAMD1Q6SPF0 538 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-214ENST00000600840 CASC1Q6TDU7 716 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 FAM122AQ96E09 287 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 SPATC1LQ9H0A9 340 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 INCENPQ9NQS7 918 aa10.36□□□□□ -0.75
TRIM28-214ENST00000600840 ARPP21Q9UBL0 812 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-214ENST00000600840 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.36□□□□□ -0.75
TRIM28-214ENST00000600840 RBM8AQ9Y5S9 174 aaKnown RBP10.36□□□□□ -0.75
TRIM28-214ENST00000600840 U3KPZ7 1027 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-214ENST00000600840 SMCHD1A6NHR9 2005 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 FLOT1O75955 427 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 APPP05067 770 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 HOXC6P09630 235 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 ATP2B2Q01814 1243 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 PPARAQ07869 468 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 TMEM132BQ14DG7 1078 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 STOX1Q6ZVD7 989 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 RASEFQ8IZ41 740 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 BADQ92934 168 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 CCDC17Q96LX7 622 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 NACAP1Q9BZK3 213 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 NAPBQ9H115 298 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 ARHGEF10LQ9HCE6 1279 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 CWC22Q9HCG8 908 aaKnown RBP10.35□□□□□ -0.75
TRIM28-214ENST00000600840 ANO2Q9NQ90 1003 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 PRDM5Q9NQX1 630 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-214ENST00000600840 HOXC10Q9NYD6 342 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 PRKAG2Q9UGJ0 569 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 ADAMTS5Q9UNA0 930 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 ATP11BQ9Y2G3 1177 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 DNAH12Q6ZR08 3092 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 ZNF236Q9UL36 1845 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 MYH4Q9Y623 1939 aa10.35□□□□□ -0.75
TRIM28-214ENST00000600840 MINDY4BA8MYZ0 360 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 SLC27A2O14975 620 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 REC8O95072 547 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 ADORA2AP29274 412 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 TDO2P48775 406 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 SMAD3P84022 425 aaKnown RBP10.34□□□□□ -0.75
TRIM28-214ENST00000600840 CTDSPL2Q05D32 466 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 PLS1Q14651 629 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 GRIN2CQ14957 1233 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 PRAMEF19Q5SWL8 479 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 ANO1Q5XXA6 986 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 CREB3L3Q68CJ9 461 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 TBC1D10CQ8IV04 446 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 TRMT44Q8IYL2 757 aaKnown RBP10.34□□□□□ -0.75
TRIM28-214ENST00000600840 STAG1Q8WVM7 1258 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 NUP88Q99567 741 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-214ENST00000600840 CTNNA3Q9UI47 895 aa10.34□□□□□ -0.75
TRIM28-214ENST00000600840 ZNF213O14771 459 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 WDR46O15213 610 aaKnown RBP10.33□□□□□ -0.76
TRIM28-214ENST00000600840 ORC4O43929 436 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 PRDM1O75626 825 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 CYBAP13498 195 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 CNGA1P29973 690 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 HOXD11P31277 338 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-214ENST00000600840 NOVP48745 357 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 HAND2P61296 217 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 FAM83BQ5T0W9 1011 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 KIAA1211Q6ZU35 1233 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 SH3RF1Q7Z6J0 888 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 NCAPG2Q86XI2 1143 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 SHCBP1Q8NEM2 672 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 REPS2Q8NFH8 660 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 PPM1EQ8WY54 764 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 LPAR1Q92633 364 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 KIF2CQ99661 725 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 KANSL2Q9H9L4 492 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 IVNS1ABPQ9Y6Y0 642 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 PLXNA1Q9UIW2 1896 aa10.33□□□□□ -0.76
TRIM28-214ENST00000600840 PRUNE2Q8WUY3 3088 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 IGKV6D-41A0A0C4DH26 115 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 RAD21O60216 631 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 RBM25P49756 843 aaKnown RBP10.32□□□□□ -0.76
TRIM28-214ENST00000600840 EPHB4P54760 987 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 ADCK5Q3MIX3 580 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 TRIM60Q495X7 471 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 AKNAD1Q5T1N1 836 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 GJC2Q5T442 439 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-214ENST00000600840 MFSD14CQ5VZR4 134 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 DPP9Q86TI2 863 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms