RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 EPB41L2O43491 1005 aaKnown RBP22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 ERCC3P19447 782 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 HOXD10P28358 340 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 SAMD1Q6SPF0 538 aaPredicted RBP22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 PLEKHH3Q7Z736 793 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 FAM160B2Q86V87 743 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 RIOX2Q8IUF8 465 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 USP26Q9BXU7 913 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 LY9Q9HBG7 655 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 MTMR7Q9Y216 660 aa22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 RBBP6Q7Z6E9 1792 aaKnown RBP22.89■■□□□ 1.25
SHKBP1-221ENST00000599833 IGHA2P01877 340 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 PTPREP23469 700 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 CCNA1P78396 465 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 EXOSC10Q01780 885 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 GRB14Q14449 540 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 IFIT1BQ5T764 474 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 COA7Q96BR5 231 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 MTA3Q9BTC8 594 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 SNX14Q9Y5W7 946 aa22.88■■□□□ 1.25
SHKBP1-221ENST00000599833 SH2B2O14492 632 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 IFIT3O14879 490 aaKnown RBP22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 PRC1O43663 620 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 REC8O95072 547 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 SLC16A2P36021 539 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 STAT3P40763 770 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 CCDC96Q2M329 555 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 SLC35G1Q2M3R5 365 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 CHURC1Q8WUH1 139 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 ZNF333Q96JL9 665 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 KAT14Q9H8E8 782 aa22.87■■□□□ 1.25
SHKBP1-221ENST00000599833 GOLGA8HP0CJ92 632 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 OAZ1P54368 228 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 SNAP25P60880 206 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 TROAPQ12815 778 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 RNF20Q5VTR2 975 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 SH3TC2Q8TF17 1288 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 TEX13BQ9BXU2 312 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 RANBP17Q9H2T7 1088 aaKnown RBP22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 CPVLQ9H3G5 476 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 RAVER2Q9HCJ3 691 aaKnown RBP22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 GPCPD1Q9NPB8 672 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 LCTP09848 1927 aa22.86■■□□□ 1.25
SHKBP1-221ENST00000599833 PLXNA1Q9UIW2 1896 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 MCM5P33992 734 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 PLS1Q14651 629 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 SYDE2Q5VT97 1194 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 STAG2Q8N3U4 1231 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 SOCS4Q8WXH5 440 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 NEK1Q96PY6 1258 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 MROH8Q9H579 483 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 MAD2L2Q9UI95 211 aa22.85■■□□□ 1.25
SHKBP1-221ENST00000599833 KIAA0100Q14667 2235 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 SLC15A5A6NIM6 579 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 SEC24BO95487 1268 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 SLC25A27O95847 323 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 HOXC6P09630 235 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 FDX1P10109 184 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 XRCC5P13010 732 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 ELNP15502 786 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 TAL1P17542 331 aaPredicted RBP22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 GRK4P32298 578 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 WTAPQ15007 396 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 TMEM67Q5HYA8 995 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 GPATCH4Q5T3I0 446 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 RAET1EQ8TD07 263 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 PXYLP1Q8TE99 480 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 LRRC2Q9BYS8 371 aa22.84■■□□□ 1.25
SHKBP1-221ENST00000599833 WDR19Q8NEZ3 1342 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 TNRC18O15417 2968 aaPredicted RBP22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 PALM3A6NDB9 673 aaPredicted RBP22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 ADCY3O60266 1144 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 ZBED4O75132 1171 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 MAP2K5Q13163 448 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 GRM4Q14833 912 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 SNRNP48Q6IEG0 339 aaKnown RBP22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 NCAPG2Q86XI2 1143 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 SLAIN1Q8ND83 568 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 TRIB2Q92519 343 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 TMEM87BQ96K49 555 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 AGBL1Q96MI9 1066 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 NUDT12Q9BQG2 462 aa22.83■■□□□ 1.25
SHKBP1-221ENST00000599833 BAZ2BQ9UIF8 2168 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 COBLO75128 1261 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 CPA1P15085 419 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 ADORA2AP29274 412 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 LIFRP42702 1097 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 TRIM32Q13049 653 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 CCL14Q16627 93 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 C8orf34Q49A92 452 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 SLC9C1Q4G0N8 1177 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 ASPRV1Q53RT3 343 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 ABRAQ8N0Z2 381 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 CPXCR1Q8N123 301 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 NPLOC4Q8TAT6 608 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 TCEANC2Q96MN5 208 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 UBA5Q9GZZ9 404 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 FLRT1Q9NZU1 646 aa22.82■■□□□ 1.24
SHKBP1-221ENST00000599833 MYH6P13533 1939 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms