RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SNHG28P0DPA3 235 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 PTGDRQ13258 359 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 PIGSQ96S52 555 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 PCDHA6Q9UN73 950 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 PCDHA8Q9Y5H6 950 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 POLR2DO15514 142 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 SMARCA1P28370 1054 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 TRAPPC10P48553 1259 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 ATP2C1P98194 919 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 DPY19L2Q6NUT2 758 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 ZSCAN29Q8IWY8 852 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 CEP57L1Q8IYX8 460 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 DAGLBQ8NCG7 672 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 CNNM3Q8NE01 707 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 CCDC148Q8NFR7 591 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 RRP36Q96EU6 259 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 PI4KBQ9UBF8 816 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 TUBE1Q9UJT0 475 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 GREB1LQ9C091 1923 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 NPM3O75607 178 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 BMP15O95972 392 aa19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 VIL1P09327 827 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 FOXP4Q8IVH2 680 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 EPSTI1Q96J88 318 aa19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 RIOX1Q9H6W3 641 aa19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 GJA3Q9Y6H8 435 aa19.46■□□□□ 0.71
SHKBP1-216ENST00000598201 MCM7P33993 719 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 NLRP12P59046 1061 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 MDM2Q00987 491 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 ISM2Q6H9L7 571 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 RSBN1LQ6PCB5 846 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 PDILTQ8N807 584 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 SERTAD1Q9UHV2 236 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 A0A087X0B3 334 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 ATP2B2Q01814 1243 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 ASPRV1Q53RT3 343 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 GPC2Q8N158 579 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 FERMT2Q96AC1 680 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 CCDC17Q96LX7 622 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 ZMYND12Q9H0C1 365 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 GPCPD1Q9NPB8 672 aa19.45■□□□□ 0.7
SHKBP1-216ENST00000598201 DDNO94850 711 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 CLCN1P35523 988 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 NAPAP54920 295 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 ZRSR1Q15695 479 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 GALNT17Q6IS24 598 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 AOPEPQ8N6M6 819 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 GMLQ99445 158 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 ZKSCAN5Q9Y2L8 839 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 PSME4Q14997 1843 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 GLTPD2A6NH11 291 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 GOLGA6L19H0YKK7 550 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 ACTN4O43707 911 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 ZNF543Q08ER8 600 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 IL17AQ16552 155 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 CERKLQ49MI3 558 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 C4orf32Q8N8J7 132 aa19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 SYMPKQ92797 1274 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 SEC63Q9UGP8 760 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 ZBTB12Q9Y330 459 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-216ENST00000598201 CCDC194A0A1B0GVG4 234 aa19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 VWA3AA6NCI4 1184 aa19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 TTBK2Q6IQ55 1244 aa19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 TATDN1Q6P1N9 297 aa19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 PLA2G4DQ86XP0 818 aa19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 ELOA2Q8IYF1 753 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 NAT10Q9H0A0 1025 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 PCDHA5Q9Y5H7 936 aa19.43■□□□□ 0.7
SHKBP1-216ENST00000598201 SMCO2A6NFE2 343 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 BECN2A8MW95 431 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 PRR29P0C7W0 189 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 ZNF75DP51815 510 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 INF2Q27J81 1249 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 GRAMD1CQ8IYS0 662 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 FAM177A1Q8N128 213 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 SPC24Q8NBT2 197 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 TRIM5Q9C035 493 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 ATRNL1Q5VV63 1379 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 SPDYE2BA6NHP3 402 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 ENTPD3O75355 529 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 SPDYE6P0CI01 402 aa19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 ZNF830Q96NB3 372 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-216ENST00000598201 EEF2P13639 858 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-216ENST00000598201 MSNP26038 577 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-216ENST00000598201 SIAH1Q8IUQ4 282 aa19.41■□□□□ 0.7
SHKBP1-216ENST00000598201 AGBL3Q8NEM8 1001 aa19.41■□□□□ 0.7
SHKBP1-216ENST00000598201 BPIFA3Q9BQP9 254 aa19.41■□□□□ 0.7
SHKBP1-216ENST00000598201 CLRN2A0PK11 232 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 JAG1P78504 1218 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 SEPT2Q15019 361 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 POSTNQ15063 836 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 KCTD1Q719H9 257 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 ADGRF4Q8IZF3 695 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 CCDC12Q8WUD4 166 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 DHX58Q96C10 678 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 TRIM34Q9BYJ4 488 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 JMJD4Q9H9V9 463 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 MYH4Q9Y623 1939 aa19.4■□□□□ 0.7
SHKBP1-216ENST00000598201 TCP10L2B9ZVM9 353 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms