RNA–Protein interactions for RNA: ENST00000593597.1

USE1-203, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-203ENST00000593597 GOPCQ9HD26 462 aa12.78□□□□□ -0.36
USE1-203ENST00000593597 XPNPEP3Q9NQH7 507 aa12.78□□□□□ -0.36
USE1-203ENST00000593597 NYAP2Q9P242 653 aa12.78□□□□□ -0.36
USE1-203ENST00000593597 PCDHB15Q9Y5E8 787 aa12.78□□□□□ -0.36
USE1-203ENST00000593597 TACC3Q9Y6A5 838 aa12.78□□□□□ -0.36
USE1-203ENST00000593597 GBF1Q92538 1859 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 MYADML2A6NDP7 307 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 RAD21O60216 631 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 SNAI1O95863 264 aaPredicted RBP12.77□□□□□ -0.37
USE1-203ENST00000593597 EPHB4P54760 987 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 C1orf53Q5VUE5 145 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 SNRNP48Q6IEG0 339 aaKnown RBP12.77□□□□□ -0.37
USE1-203ENST00000593597 GIMAP6Q6P9H5 292 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 RASGRP2Q7LDG7 609 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 AMOTL1Q8IY63 956 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 LRRC47Q8N1G4 583 aaKnown RBP12.77□□□□□ -0.37
USE1-203ENST00000593597 CEP95Q96GE4 821 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 NRBP1Q9UHY1 535 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 DIS3Q9Y2L1 958 aaKnown RBP12.77□□□□□ -0.37
USE1-203ENST00000593597 SALL3Q9BXA9 1300 aa12.77□□□□□ -0.37
USE1-203ENST00000593597 A0A1W2PQ45 241 aaPredicted RBP12.76□□□□□ -0.37
USE1-203ENST00000593597 A0A1W2PQY0 241 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 DLL1O00548 723 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 TLE2Q04725 743 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.76□□□□□ -0.37
USE1-203ENST00000593597 DDRGK1Q96HY6 314 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 FAM161BQ96MY7 647 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 TEX13BQ9BXU2 312 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 CHMP4BQ9H444 224 aaKnown RBP12.76□□□□□ -0.37
USE1-203ENST00000593597 PRDM5Q9NQX1 630 aaPredicted RBP12.76□□□□□ -0.37
USE1-203ENST00000593597 SLC5A4Q9NY91 659 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 CLIP2Q9UDT6 1046 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 SYNRGQ9UMZ2 1314 aa12.76□□□□□ -0.37
USE1-203ENST00000593597 ATP2A1O14983 1001 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 RARBP10826 455 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 KCTD2Q14681 263 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 FAM109BQ6ICB4 259 aaPredicted RBP12.75□□□□□ -0.37
USE1-203ENST00000593597 CCSAPQ6IQ19 270 aaPredicted RBP12.75□□□□□ -0.37
USE1-203ENST00000593597 IFNL3Q8IZI9 196 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 KLHDC9Q8NEP7 349 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 MKL1Q969V6 931 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 LBHD1Q9BQE6 289 aaPredicted RBP12.75□□□□□ -0.37
USE1-203ENST00000593597 KATNBL1Q9H079 304 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 MKNK2Q9HBH9 465 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 SLC38A10Q9HBR0 1119 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 RAVER2Q9HCJ3 691 aaKnown RBP12.75□□□□□ -0.37
USE1-203ENST00000593597 MTMR4Q9NYA4 1195 aa12.75□□□□□ -0.37
USE1-203ENST00000593597 REV3LO60673 3130 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 ASTN1O14525 1302 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 ZNF536O15090 1300 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 SYNGAP1Q96PV0 1343 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 AKR1A1P14550 325 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 PTGS1P23219 599 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 TDO2P48775 406 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 MAMDC4Q6UXC1 1216 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 CCDC129Q6ZRS4 1044 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 CPXCR1Q8N123 301 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 TTYH1Q9H313 450 aaPredicted RBP12.74□□□□□ -0.37
USE1-203ENST00000593597 INCENPQ9NQS7 918 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 DDX49Q9Y6V7 483 aaKnown RBP12.74□□□□□ -0.37
USE1-203ENST00000593597 CHD7Q9P2D1 2997 aa12.74□□□□□ -0.37
USE1-203ENST00000593597 TTC41PQ6P2S7 1318 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 PATL2C9JE40 543 aaKnown RBP12.73□□□□□ -0.37
USE1-203ENST00000593597 CTAGE5O15320 804 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 ZFYP08048 801 aaPredicted RBP12.73□□□□□ -0.37
USE1-203ENST00000593597 COPB2P35606 906 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 ZMYM1Q5SVZ6 1142 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 PRPF38AQ8NAV1 312 aaKnown RBP12.73□□□□□ -0.37
USE1-203ENST00000593597 GMCL1P1Q8NEA9 526 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 NEDD1Q8NHV4 660 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 KIFC2Q96AC6 838 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 PRKAG2Q9UGJ0 569 aa12.73□□□□□ -0.37
USE1-203ENST00000593597 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.73□□□□□ -0.37
USE1-203ENST00000593597 LAMA4Q16363 1823 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 KIAA0355O15063 1070 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 PQBP1O60828 265 aaKnown RBP12.72□□□□□ -0.37
USE1-203ENST00000593597 CLTBP09497 229 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 GNAT2P19087 354 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 SLC4A3P48751 1232 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 ACLYP53396 1101 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 CNTN2Q02246 1040 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 FAAP100Q0VG06 881 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 RNF180Q86T96 592 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 CHMP4CQ96CF2 233 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 IL17RBQ9NRM6 502 aa12.72□□□□□ -0.37
USE1-203ENST00000593597 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.72□□□□□ -0.37
USE1-203ENST00000593597 ZHX1Q9UKY1 873 aaPredicted RBP12.72□□□□□ -0.37
USE1-203ENST00000593597 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.71□□□□□ -0.37
USE1-203ENST00000593597 NMT2O60551 498 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 TTLL1O95922 423 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 APPP05067 770 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 TFAP4Q01664 338 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 CTDSPL2Q05D32 466 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 PPARAQ07869 468 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 KCNA10Q16322 511 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 VPS53Q5VIR6 699 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 SLFN13Q68D06 897 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 ANKRD33Q7Z3H0 272 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 ZNF467Q7Z7K2 595 aaPredicted RBP12.71□□□□□ -0.37
USE1-203ENST00000593597 MSL3Q8N5Y2 521 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms