RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-208ENST00000589797 TDRD3Q9H7E2 651 aaKnown RBP16.33■□□□□ 0.21
RETREG3-208ENST00000589797 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
RETREG3-208ENST00000589797 CYLC1P35663 651 aaPredicted RBP16.33■□□□□ 0.2
RETREG3-208ENST00000589797 SF3B3Q15393 1217 aaKnown RBP16.33■□□□□ 0.2
RETREG3-208ENST00000589797 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.33■□□□□ 0.2
RETREG3-208ENST00000589797 FAM13AO94988 1023 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 KIF20AO95235 890 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 PTPREP23469 700 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 CHRNA5P30532 468 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 SGMS1Q86VZ5 419 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 CNGA4Q8IV77 575 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 ANKRD13CQ8N6S4 541 aa16.33■□□□□ 0.2
RETREG3-208ENST00000589797 RGPD8O14715 1765 aaPredicted RBP16.33■□□□□ 0.2
RETREG3-208ENST00000589797 RPN1P04843 607 aaKnown RBP16.32■□□□□ 0.2
RETREG3-208ENST00000589797 EVCP57679 992 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 KIF5AQ12840 1032 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 TPH2Q8IWU9 490 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 ATF5Q9Y2D1 282 aaPredicted RBP16.32■□□□□ 0.2
RETREG3-208ENST00000589797 SRPRBQ9Y5M8 271 aaKnown RBP16.32■□□□□ 0.2
RETREG3-208ENST00000589797 GOLGA6L9A6NEM1 432 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 HMGB2P26583 209 aaKnown RBP16.32■□□□□ 0.2
RETREG3-208ENST00000589797 PAFAH1B1P43034 410 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 MORC3Q14149 939 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 ALX1Q15699 326 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 GDAP1L1Q96MZ0 367 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 PCDHA4Q9UN74 947 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 COL5A2P05997 1499 aaPredicted RBP16.32■□□□□ 0.2
RETREG3-208ENST00000589797 CTAGE9A4FU28 777 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 SLFN14P0C7P3 912 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 LRP10Q7Z4F1 713 aa16.32■□□□□ 0.2
RETREG3-208ENST00000589797 BICDL2A1A5D9 508 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 KCNJ18B7U540 433 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 MEIS1O00470 390 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 CASP14P31944 242 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 KCNJ12Q14500 433 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 TMEM260Q9NX78 707 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 NEK11Q8NG66 645 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 ALDH8A1Q9H2A2 487 aaPredicted RBP16.31■□□□□ 0.2
RETREG3-208ENST00000589797 USP27XA6NNY8 438 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 CUL4BQ13620 913 aa16.31■□□□□ 0.2
RETREG3-208ENST00000589797 HLTFQ14527 1009 aaKnown RBP eCLIP16.31■□□□□ 0.2
RETREG3-208ENST00000589797 ARHGAP6O43182 974 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 HOXA13P31271 388 aaPredicted RBP16.3■□□□□ 0.2
RETREG3-208ENST00000589797 EVX2Q03828 476 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 KCNB2Q92953 911 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 PAGE5Q96GU1 130 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L15C9J2P7 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L13C9JLJ4 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L11C9JVI0 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L18D6R9N7 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L22D6RA61 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L17D6RBQ6 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L19D6RCP7 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L20D6RJB6 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L24Q0WX57 530 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 USP17L6PQ6QN14 398 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 BICD1Q96G01 975 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 ABCC12Q96J65 1359 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 CTAGE15A4D2H0 777 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 CTAGE8P0CG41 777 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 CTAGE6Q86UF2 777 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 CTAGE4Q8IX94 777 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 IMPACTQ9P2X3 320 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 PCDHB13Q9Y5F0 798 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 C3P01024 1663 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 ABCB5Q2M3G0 1257 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 CCDC65Q8IXS2 484 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 KIAA1024Q9UPX6 916 aa16.3■□□□□ 0.2
RETREG3-208ENST00000589797 SPATA1Q5VX52 437 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 DPF2Q92785 391 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 LZTS2Q9BRK4 669 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 LRRC27Q9C0I9 530 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 PABPC4Q13310 644 aaKnown RBP eCLIP16.29■□□□□ 0.26e-14■■■□□ 18
RETREG3-208ENST00000589797 VPS72Q15906 364 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 RESP18Q5W5W9 173 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 CNNM4Q6P4Q7 775 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 PEAK1Q9H792 1746 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 ARHGEF10LQ9HCE6 1279 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 DDX25Q9UHL0 483 aaKnown RBP16.29■□□□□ 0.2
RETREG3-208ENST00000589797 TRIM49BA6NDI0 452 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 AP5Z1O43299 807 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 TYW1BQ6NUM6 668 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 VPS36Q86VN1 386 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 DHX37Q8IY37 1157 aaKnown RBP16.29■□□□□ 0.2
RETREG3-208ENST00000589797 CAMTA1Q9Y6Y1 1673 aa16.29■□□□□ 0.2
RETREG3-208ENST00000589797 POTEMA6NI47 508 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 TTLL1O95922 423 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 RASGRP2Q7LDG7 609 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 DGKHQ86XP1 1220 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 GJA10Q969M2 543 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 SCLT1Q96NL6 688 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 ARFGAP3Q9NP61 516 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 FGFR2P21802 821 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 GTF2F1P35269 517 aaKnown RBP eCLIP16.28■□□□□ 0.2
RETREG3-208ENST00000589797 TERF1P54274 439 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 AOC3Q16853 763 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 TTBK2Q6IQ55 1244 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 RRAGAQ7L523 313 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 BACH1O14867 736 aa16.28■□□□□ 0.2
RETREG3-208ENST00000589797 KRT86O43790 486 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms