RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 PNMA3Q9UL41 463 aa12.49□□□□□ -0.41
SMARCA4-213ENST00000587988 PPP1R9AQ9ULJ8 1098 aa12.49□□□□□ -0.41
SMARCA4-213ENST00000587988 GOLGA8AA7E2F4 631 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 GOLGA8BA8MQT2 603 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CNMDO75829 334 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 PLEKHA8P1O95397 391 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 LARGE1O95461 756 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CALM1P0DP23 149 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CALM2P0DP24 149 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CALM3P0DP25 149 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CCT2P78371 535 aaKnown RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 IKQ13123 557 aaPredicted RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 STK3Q13188 491 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 FAM160B2Q86V87 743 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CMTR1Q8N1G2 835 aaKnown RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 PRPF38AQ8NAV1 312 aaKnown RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 SMCR8Q8TEV9 937 aaPredicted RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CHURC1Q8WUH1 139 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 ZNF274Q96GC6 653 aaPredicted RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 MAP3K14Q99558 947 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 HOXC10Q9NYD6 342 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 RBPJLQ9UBG7 517 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 CPA4Q9UI42 421 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 TSKSQ9UJT2 592 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 PRR12Q9ULL5 1215 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 ADAMTS5Q9UNA0 930 aa12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 COL11A1P12107 1806 aaPredicted RBP12.48□□□□□ -0.41
SMARCA4-213ENST00000587988 MYPNQ86TC9 1320 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 KLRF2D3W0D1 207 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 VWA5AO00534 786 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 CYTH3O43739 400 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 TLR2O60603 784 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 ADD1P35611 737 aaKnown RBP12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 METAP2P50579 478 aaKnown RBP eCLIP12.47□□□□□ -0.411e-7■■□□□ 11.8
SMARCA4-213ENST00000587988 ANKRD1Q15327 319 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 ME3Q16798 604 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 RTN1Q16799 776 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 Q3C1V9 767 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 SYDE2Q5VT97 1194 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 C17orf99Q6UX52 265 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 LBX2Q6XYB7 198 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 ADGRF4Q8IZF3 695 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 SRBD1Q8N5C6 995 aaKnown RBP12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 ANKRD13CQ8N6S4 541 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 REPS2Q8NFH8 660 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 CTCFLQ8NI51 663 aaPredicted RBP12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 CFHR5Q9BXR6 569 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 VAT1LQ9HCJ6 419 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 BTBD7Q9P203 1132 aa12.47□□□□□ -0.41
SMARCA4-213ENST00000587988 BAZ2BQ9UIF8 2168 aaKnown RBP12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 NID2Q14112 1375 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 A0A0G2JMZ2 1700 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 BCRP11274 1271 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 KIF5BP33176 963 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 RCAN1P53805 252 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 TMEM132BQ14DG7 1078 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 TMTC3Q6ZXV5 915 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 CCDC82Q8N4S0 544 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 PAGR1Q9BTK6 254 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 RIOX1Q9H6W3 641 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 JMJD4Q9H9V9 463 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 NCOA5Q9HCD5 579 aaKnown RBP12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 SAGE1Q9NXZ1 904 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 LIMCH1Q9UPQ0 1083 aa12.46□□□□□ -0.41
SMARCA4-213ENST00000587988 ST18O60284 1047 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 PFKFB2O60825 505 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 DTNBO60941 627 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 TAL1P17542 331 aaPredicted RBP12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 GCLCP48506 637 aaPredicted RBP12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 FUT2Q10981 343 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 ST3GAL1Q11201 340 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 SCRN1Q12765 414 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 CCDC174Q6PII3 467 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 CPXCR1Q8N123 301 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 NECAB1Q8N987 351 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 PIBF1Q8WXW3 757 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 BEGAINQ9BUH8 593 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 SLKQ9H2G2 1235 aaPredicted RBP12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 RANBP17Q9H2T7 1088 aaKnown RBP12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 SLC38A10Q9HBR0 1119 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 RAVER2Q9HCJ3 691 aaKnown RBP12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 RBM28Q9NW13 759 aaKnown RBP12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 RABGAP1Q9Y3P9 1069 aa12.45□□□□□ -0.42
SMARCA4-213ENST00000587988 ZNF536O15090 1300 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 SMCHD1A6NHR9 2005 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 GPR25O00155 361 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 DHX16O60231 1041 aaKnown RBP12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 ZBED4O75132 1171 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 PPFIA3O75145 1194 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 ECM2O94769 699 aaPredicted RBP12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 GNAQP50148 359 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 ERVK-9P63128 1117 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 ERVK-24P63145 666 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 CAP1Q01518 475 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 NTRK3Q16288 839 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 CDC37Q16543 378 aaPredicted RBP12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 FAM110CQ1W6H9 321 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 MB21D1Q8N884 522 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 GTF3C2Q8WUA4 911 aaPredicted RBP12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 MTMR8Q96EF0 704 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms