RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.83□□□□□ -0.36
LIG3-204ENST00000585740 HEATR3Q7Z4Q2 680 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 METTL16Q86W50 562 aaKnown RBP12.83□□□□□ -0.36
LIG3-204ENST00000585740 FOXP4Q8IVH2 680 aaPredicted RBP12.83□□□□□ -0.36
LIG3-204ENST00000585740 TTLL6Q8N841 843 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 PIBF1Q8WXW3 757 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 GPKOWQ92917 476 aaPredicted RBP eCLIP12.83□□□□□ -0.36
LIG3-204ENST00000585740 MXD3Q9BW11 206 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 TRIM34Q9BYJ4 488 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 ZMYND12Q9H0C1 365 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 RIOX1Q9H6W3 641 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 PI4KBQ9UBF8 816 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 SIPA1L1O43166 1804 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 PPIP5K2O43314 1243 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 ENTPD3O75355 529 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 PDHBP11177 359 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 LONP1P36776 959 aaKnown RBP12.82□□□□□ -0.36
LIG3-204ENST00000585740 TXLNAP40222 546 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 RBM5P52756 815 aaKnown RBP eCLIP12.82□□□□□ -0.36
LIG3-204ENST00000585740 FSTL1Q12841 308 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 PNOCQ13519 176 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 DPCR1Q3MIW9 517 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 GPATCH4Q5T3I0 446 aaKnown RBP12.82□□□□□ -0.36
LIG3-204ENST00000585740 NT5DC1Q5TFE4 455 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 KIAA0825Q8IV33 1275 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 SMARCE1Q969G3 411 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 PSMD1Q99460 953 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 SERTAD1Q9UHV2 236 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 PCDHA6Q9UN73 950 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 PCDHA8Q9Y5H6 950 aa12.82□□□□□ -0.36
LIG3-204ENST00000585740 USP17L5A8MUK1 530 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 ACTN4O43707 911 aaKnown RBP12.81□□□□□ -0.36
LIG3-204ENST00000585740 NEMFO60524 1076 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 SLFN14P0C7P3 912 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 TGFB2P61812 414 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 MDM2Q00987 491 aaPredicted RBP12.81□□□□□ -0.36
LIG3-204ENST00000585740 GRIN1Q05586 938 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 AOC3Q16853 763 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 SLC35G1Q2M3R5 365 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 USP17L2Q6R6M4 530 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 MLKLQ8NB16 471 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 ERCC4Q92889 916 aaPredicted RBP12.81□□□□□ -0.36
LIG3-204ENST00000585740 ZNF219Q9P2Y4 722 aaPredicted RBP12.81□□□□□ -0.36
LIG3-204ENST00000585740 CLIP2Q9UDT6 1046 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 HDAC9Q9UKV0 1011 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 MTMR7Q9Y216 660 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 PCDHA5Q9Y5H7 936 aa12.81□□□□□ -0.36
LIG3-204ENST00000585740 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.8□□□□□ -0.36
LIG3-204ENST00000585740 SMCO2A6NFE2 343 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 BIN1O00499 593 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 CBFA2T2O43439 604 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 OFD1O75665 1012 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 GOLGA8HP0CJ92 632 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 MCM7P33993 719 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 PRPHP41219 470 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 SARSP49591 514 aaKnown RBP12.8□□□□□ -0.36
LIG3-204ENST00000585740 MYL5Q02045 173 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 ZNF543Q08ER8 600 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 NONOQ15233 471 aaKnown RBP eCLIP12.8□□□□□ -0.36
LIG3-204ENST00000585740 SPECC1Q5M775 1068 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 C9orf131Q5VYM1 1079 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 IQUBQ8NA54 791 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 SPC24Q8NBT2 197 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 DCAF4Q8WV16 495 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 SYMPKQ92797 1274 aaKnown RBP12.8□□□□□ -0.36
LIG3-204ENST00000585740 MKL1Q969V6 931 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 GLT8D2Q9H1C3 349 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 TMOD2Q9NZR1 351 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 NYAP2Q9P242 653 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 ARFGEF1Q9Y6D6 1849 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 ATRNL1Q5VV63 1379 aa12.8□□□□□ -0.36
LIG3-204ENST00000585740 VWA3AA6NCI4 1184 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 MPHOSPH10O00566 681 aaKnown RBP12.79□□□□□ -0.36
LIG3-204ENST00000585740 C21orf2O43822 256 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 VEGFAP15692 232 aaPredicted RBP12.79□□□□□ -0.36
LIG3-204ENST00000585740 DPEP1P16444 411 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 NFIAQ12857 509 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 CFAP100Q494V2 611 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 CERKLQ49MI3 558 aaPredicted RBP12.79□□□□□ -0.36
LIG3-204ENST00000585740 TYW1BQ6NUM6 668 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 DTHD1Q6ZMT9 781 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 SH3RF1Q7Z6J0 888 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 LRRC47Q8N1G4 583 aaKnown RBP12.79□□□□□ -0.36
LIG3-204ENST00000585740 C4orf32Q8N8J7 132 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 DHX58Q96C10 678 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 PIGSQ96S52 555 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 KANSL2Q9H9L4 492 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 KCNQ5Q9NR82 932 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 IMPACTQ9P2X3 320 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 FAM198AQ9UFP1 575 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 MAN1B1Q9UKM7 699 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 SYNPO2Q9UMS6 1093 aa12.79□□□□□ -0.36
LIG3-204ENST00000585740 PNMA6FA0A0J9YX94 578 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 ADCY7P51828 1080 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 GSDMDP57764 484 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 SEMA3FQ13275 785 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 MORC3Q14149 939 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 NCAPHQ15003 741 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 NOM1Q5C9Z4 860 aaKnown RBP12.78□□□□□ -0.36
LIG3-204ENST00000585740 TATDN1Q6P1N9 297 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms