RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 IGKV6D-41A0A0C4DH26 115 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 PALM3A6NDB9 673 aaPredicted RBP11.96□□□□□ -0.49
LIG3-203ENST00000585370 TCP10L2B9ZVM9 353 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 PPFIA3O75145 1194 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 CALML3P27482 149 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 TNFAIP1Q13829 316 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 SLC4A8Q2Y0W8 1093 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 ANO1Q5XXA6 986 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 OTUD7BQ6GQQ9 843 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 GALNT17Q6IS24 598 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 NOSTRINQ8IVI9 506 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 SRBD1Q8N5C6 995 aaKnown RBP11.96□□□□□ -0.49
LIG3-203ENST00000585370 USP28Q96RU2 1077 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 TMEM39BQ9GZU3 492 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 DDX19AQ9NUU7 478 aaKnown RBP11.96□□□□□ -0.49
LIG3-203ENST00000585370 FAM198AQ9UFP1 575 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 STX8Q9UNK0 236 aa11.96□□□□□ -0.49
LIG3-203ENST00000585370 DDX60LQ5H9U9 1706 aaKnown RBP11.96□□□□□ -0.49
LIG3-203ENST00000585370 ATRNL1Q5VV63 1379 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 A0A1W2PQ27 194 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 A0A1W2PQ64 194 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 A0A1W2PQD8 194 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 TESPA1A2RU30 521 aaPredicted RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 PLEKHA8P1O95397 391 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 TTLL1O95922 423 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 PARP1P09874 1014 aaKnown RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 SCG2P13521 617 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 SHMT1P34896 483 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 NFIAQ12857 509 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 CRHR2Q13324 411 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 STK38Q15208 465 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 SF3A1Q15459 793 aaKnown RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 PKN1Q16512 942 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 PFKFB3Q16875 520 aaPredicted RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 RILPL1Q5EBL4 403 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 ADALQ6DHV7 355 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 LRSAM1Q6UWE0 723 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 ZSCAN29Q8IWY8 852 aaPredicted RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 DIS3L2Q8IYB7 885 aaKnown RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 CCDC82Q8N4S0 544 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 LINC00301Q8NCQ3 95 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 CNKSR2Q8WXI2 1034 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 OPTNQ96CV9 577 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 AIFM3Q96NN9 605 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 PHF20Q9BVI0 1012 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 SPZ1Q9BXG8 430 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 ELP3Q9H9T3 547 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 HERC5Q9UII4 1024 aaKnown RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 CEP131Q9UPN4 1083 aa11.95□□□□□ -0.5
LIG3-203ENST00000585370 MORC2Q9Y6X9 1032 aaPredicted RBP11.95□□□□□ -0.5
LIG3-203ENST00000585370 CNTNAP5Q8WYK1 1306 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 SPTLC2O15270 562 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 PPP6R2O75170 966 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 BMP15O95972 392 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 GUCY1A2P33402 732 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 KRT2P35908 639 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 CACNB3P54284 484 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 MAP3K9P80192 1104 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 CAP1Q01518 475 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 SLC39A14Q15043 492 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 CERKLQ49MI3 558 aaPredicted RBP11.94□□□□□ -0.5
LIG3-203ENST00000585370 ASPRV1Q53RT3 343 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 TATDN1Q6P1N9 297 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 OTOP1Q7RTM1 612 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 FAM83AQ86UY5 434 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 BICD2Q8TD16 824 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 CCDC12Q8WUD4 166 aaPredicted RBP11.94□□□□□ -0.5
LIG3-203ENST00000585370 FAM151AQ8WW52 585 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 CEP95Q96GE4 821 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 MS4A4AQ96JQ5 239 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 KANSL2Q9H9L4 492 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 NYAP2Q9P242 653 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 MAD2L2Q9UI95 211 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 SYNPO2Q9UMS6 1093 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 TRIM17Q9Y577 477 aa11.94□□□□□ -0.5
LIG3-203ENST00000585370 KIAA0100Q14667 2235 aaKnown RBP11.93□□□□□ -0.5
LIG3-203ENST00000585370 KIF28PB7ZC32 967 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 KLRF2D3W0D1 207 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 hCG_1984214I3L0E3 225 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 CTAGE5O15320 804 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 AKR1B1P15121 316 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 ME1P48163 572 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 TCP10Q12799 353 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 VGLL4Q14135 290 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 CCDC73Q6ZRK6 1079 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 TMEM179Q6ZVK1 233 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 ZNF713Q8N859 430 aaPredicted RBP11.93□□□□□ -0.5
LIG3-203ENST00000585370 CCDC148Q8NFR7 591 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIG3-203ENST00000585370 MKL1Q969V6 931 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 PGBD1Q96JS3 809 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 GRPEL1Q9HAV7 217 aa11.93□□□□□ -0.5
LIG3-203ENST00000585370 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.93□□□□□ -0.5
LIG3-203ENST00000585370 NOL7Q9UMY1 257 aaKnown RBP11.93□□□□□ -0.5
LIG3-203ENST00000585370 DDTLA6NHG4 134 aaPredicted RBP11.92□□□□□ -0.5
LIG3-203ENST00000585370 BTBD18B2RXH4 712 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 TBC1D12O60347 775 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 SNHG28P0DPA3 235 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 TRAPPC10P48553 1259 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms