RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 TMEM39AQ9NV64 488 aa16.28■□□□□ 0.2
SS18-222ENST00000582792 SYNRGQ9UMZ2 1314 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 CHD9Q3L8U1 2897 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 FOSL2P15408 326 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 ACLYP53396 1101 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 FPGSQ05932 587 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 FAAP100Q0VG06 881 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 SLF1Q9BQI6 1058 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 TEX13BQ9BXU2 312 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 PUS7LQ9H0K6 701 aaKnown RBP16.27■□□□□ 0.2
SS18-222ENST00000582792 ARPP21Q9UBL0 812 aaPredicted RBP16.27■□□□□ 0.2
SS18-222ENST00000582792 DDX19BQ9UMR2 479 aa16.27■□□□□ 0.2
SS18-222ENST00000582792 SYNGAP1Q96PV0 1343 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 MOXD2PA6NHM9 499 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 ZSCAN25Q6NSZ9 544 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 MAMDC4Q6UXC1 1216 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 KLHDC9Q8NEP7 349 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 NUP133Q8WUM0 1156 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 NUP88Q99567 741 aaPredicted RBP16.26■□□□□ 0.19
SS18-222ENST00000582792 STARD7Q9NQZ5 370 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 FAM184BQ9ULE4 1060 aa16.26■□□□□ 0.19
SS18-222ENST00000582792 DNAJC25-GNG10A0A024R161 153 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 DCDC2CA8MYV0 355 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 F5H6K3 240 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 SNAI1O95863 264 aaPredicted RBP16.25■□□□□ 0.19
SS18-222ENST00000582792 KLRC3Q07444 240 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 KCNA10Q16322 511 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 SBK1Q52WX2 424 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 SNRNP48Q6IEG0 339 aaKnown RBP16.25■□□□□ 0.19
SS18-222ENST00000582792 CCSAPQ6IQ19 270 aaPredicted RBP16.25■□□□□ 0.19
SS18-222ENST00000582792 DDX11Q96FC9 970 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 NYAP2Q9P242 653 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 COG6Q9Y2V7 657 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 RIPK3Q9Y572 518 aa16.25■□□□□ 0.19
SS18-222ENST00000582792 TTC28Q96AY4 2481 aa16.24■□□□□ 0.19
SS18-222ENST00000582792 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.24■□□□□ 0.19
SS18-222ENST00000582792 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.24■□□□□ 0.19
SS18-222ENST00000582792 ATP2A1O14983 1001 aa16.24■□□□□ 0.19
SS18-222ENST00000582792 DUSP11O75319 330 aaKnown RBP16.24■□□□□ 0.19
SS18-222ENST00000582792 TIMP1P01033 207 aa16.24■□□□□ 0.19
SS18-222ENST00000582792 RASA1P20936 1047 aa16.24■□□□□ 0.19
SS18-222ENST00000582792 DNAJB2P25686 324 aa16.24■□□□□ 0.19
SS18-222ENST00000582792 ZNF467Q7Z7K2 595 aaPredicted RBP16.24■□□□□ 0.19
SS18-222ENST00000582792 PRPF38AQ8NAV1 312 aaKnown RBP16.24■□□□□ 0.19
SS18-222ENST00000582792 ZHX1Q9UKY1 873 aaPredicted RBP16.24■□□□□ 0.19
SS18-222ENST00000582792 NDUFB10O96000 172 aa16.23■□□□□ 0.19
SS18-222ENST00000582792 CST5P28325 142 aaPredicted RBP16.23■□□□□ 0.19
SS18-222ENST00000582792 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.23■□□□□ 0.19
SS18-222ENST00000582792 STRBPQ96SI9 672 aaKnown RBP16.23■□□□□ 0.19
SS18-222ENST00000582792 TBX21Q9UL17 535 aa16.23■□□□□ 0.19
SS18-222ENST00000582792 MUC3AQ02505 3323 aa16.23■□□□□ 0.19
SS18-222ENST00000582792 ELP1O95163 1332 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 MROH7Q68CQ1 1323 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 MYADML2A6NDP7 307 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 GSG1L2A8MUP6 293 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 ZBED4O75132 1171 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 CDK7P50613 346 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 ACVR2BQ13705 512 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 GRIN2CQ14957 1233 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 MFSD5Q6N075 450 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 GIMAP6Q6P9H5 292 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 CPXCR1Q8N123 301 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 SYMPKQ92797 1274 aaKnown RBP16.22■□□□□ 0.19
SS18-222ENST00000582792 GLT1D1Q96MS3 346 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.22■□□□□ 0.19
SS18-222ENST00000582792 LRRCC1Q9C099 1032 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 CHMP4BQ9H444 224 aaKnown RBP16.22■□□□□ 0.19
SS18-222ENST00000582792 MKNK2Q9HBH9 465 aa16.22■□□□□ 0.19
SS18-222ENST00000582792 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.22■□□□□ 0.19
SS18-222ENST00000582792 IGKV6D-41A0A0C4DH26 115 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 ADCY6O43306 1168 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 SLC4A3P48751 1232 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 STK11IPQ8N1F8 1099 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 PCSK9Q8NBP7 692 aaKnown RBP16.21■□□□□ 0.19
SS18-222ENST00000582792 FGD4Q96M96 766 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 UPF3AQ9H1J1 476 aaKnown RBP16.21■□□□□ 0.19
SS18-222ENST00000582792 ABHD16BQ9H3Z7 469 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 SLC38A10Q9HBR0 1119 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 CLIP2Q9UDT6 1046 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 MYH4Q9Y623 1939 aa16.21■□□□□ 0.19
SS18-222ENST00000582792 MINDY4BA8MYZ0 360 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 ASGR1P07306 291 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 C6orf222P0C671 652 aaPredicted RBP16.2■□□□□ 0.18
SS18-222ENST00000582792 GJA9P57773 515 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 IRX5P78411 483 aaPredicted RBP16.2■□□□□ 0.18
SS18-222ENST00000582792 PPIGQ13427 754 aaKnown RBP eCLIP16.2■□□□□ 0.184e-6■■□□□ 13.5
SS18-222ENST00000582792 CCDC144BQ3MJ40 725 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 ANKRD35Q8N283 1001 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 CHST13Q8NET6 341 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 MKL1Q969V6 931 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 KIFC2Q96AC6 838 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 TIFAQ96CG3 184 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 ZNF576Q9H609 170 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 SPC25Q9HBM1 224 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 RAVER2Q9HCJ3 691 aaKnown RBP16.2■□□□□ 0.18
SS18-222ENST00000582792 ECHDC1Q9NTX5 307 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 FBXO40Q9UH90 709 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 SYNPO2Q9UMS6 1093 aa16.2■□□□□ 0.18
SS18-222ENST00000582792 CTDP1Q9Y5B0 961 aaPredicted RBP16.2■□□□□ 0.18
SS18-222ENST00000582792 MCM3APO60318 1980 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms