RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GPR153Q6NV75 609 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 NEDD1Q8NHV4 660 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 TEX13BQ9BXU2 312 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 RWDD1Q9H446 243 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-209ENST00000582653 DNAH12Q6ZR08 3092 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 FRMPD3Q5JV73 1810 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 ATP2A1O14983 1001 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 TTLL1O95922 423 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 SLC3A2P08195 630 aaKnown RBP24.33■■□□□ 1.49
SHMT1-209ENST00000582653 AAMPQ13685 434 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 SLC39A5Q6ZMH5 540 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 SMC5Q8IY18 1101 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 LRRC47Q8N1G4 583 aaKnown RBP24.33■■□□□ 1.49
SHMT1-209ENST00000582653 FAM227BQ96M60 508 aa24.33■■□□□ 1.49
SHMT1-209ENST00000582653 KBTBD13C9JR72 458 aa24.32■■□□□ 1.48
SHMT1-209ENST00000582653 ZBED4O75132 1171 aa24.32■■□□□ 1.48
SHMT1-209ENST00000582653 FEM1BQ9UK73 627 aa24.32■■□□□ 1.48
SHMT1-209ENST00000582653 RIPK3Q9Y572 518 aa24.32■■□□□ 1.48
SHMT1-209ENST00000582653 TACC3Q9Y6A5 838 aa24.32■■□□□ 1.48
SHMT1-209ENST00000582653 MDM2Q00987 491 aaPredicted RBP24.31■■□□□ 1.48
SHMT1-209ENST00000582653 LRRC41Q15345 812 aa24.31■■□□□ 1.48
SHMT1-209ENST00000582653 SNRNP48Q6IEG0 339 aaKnown RBP24.31■■□□□ 1.48
SHMT1-209ENST00000582653 GMCL1P1Q8NEA9 526 aa24.31■■□□□ 1.48
SHMT1-209ENST00000582653 CHMP4CQ96CF2 233 aa24.31■■□□□ 1.48
SHMT1-209ENST00000582653 HELLSQ9NRZ9 838 aa24.31■■□□□ 1.48
SHMT1-209ENST00000582653 A0A0D9SFI3 127 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 TRIM6-TRIM34B2RNG4 842 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 SLC4A3P48751 1232 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 RTP1P59025 263 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 MSL3Q8N5Y2 521 aaKnown RBP24.3■■□□□ 1.48
SHMT1-209ENST00000582653 KIFC2Q96AC6 838 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 DDX11Q96FC9 970 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 SLC38A10Q9HBR0 1119 aa24.3■■□□□ 1.48
SHMT1-209ENST00000582653 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.3■■□□□ 1.48
SHMT1-209ENST00000582653 PLIN4Q96Q06 1357 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 ZNF865P0CJ78 1059 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-209ENST00000582653 RARBP10826 455 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 ADCYAP1R1P41586 468 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 CHD1LQ86WJ1 897 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 CPXCR1Q8N123 301 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 RILPL2Q969X0 211 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 LBHD1Q9BQE6 289 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-209ENST00000582653 PRKAG2Q9UGJ0 569 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 CTDP1Q9Y5B0 961 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-209ENST00000582653 MYH4Q9Y623 1939 aa24.29■■□□□ 1.48
SHMT1-209ENST00000582653 DNAJC25-GNG10A0A024R161 153 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 NMT2O60551 498 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 MYCNP04198 464 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-209ENST00000582653 FDX1P10109 184 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 BMP3P12645 472 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 NMIQ13287 307 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-209ENST00000582653 SNX17Q15036 470 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 MCMDC2Q4G0Z9 681 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 C1orf53Q5VUE5 145 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 SLFN13Q68D06 897 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 MAMDC4Q6UXC1 1216 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.28■■□□□ 1.48
SHMT1-209ENST00000582653 XPNPEP3Q9NQH7 507 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 ATP11BQ9Y2G3 1177 aa24.28■■□□□ 1.48
SHMT1-209ENST00000582653 TSPY2A6NKD2 308 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 TAL1P17542 331 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-209ENST00000582653 OAZ1P54368 228 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 NUCB1Q02818 461 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 ZNF589Q86UQ0 364 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-209ENST00000582653 PLEKHM2Q8IWE5 1019 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 RAVER2Q9HCJ3 691 aaKnown RBP24.27■■□□□ 1.48
SHMT1-209ENST00000582653 IL17RBQ9NRM6 502 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 ANAPC4Q9UJX5 808 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 CNPY2Q9Y2B0 182 aa24.27■■□□□ 1.48
SHMT1-209ENST00000582653 SUPT16HQ9Y5B9 1047 aaKnown RBP24.27■■□□□ 1.48
SHMT1-209ENST00000582653 FGAP02671 866 aa24.26■■□□□ 1.47
SHMT1-209ENST00000582653 AKR1A1P14550 325 aa24.26■■□□□ 1.47
SHMT1-209ENST00000582653 ALX1Q15699 326 aa24.26■■□□□ 1.47
SHMT1-209ENST00000582653 PPP4R3BQ5MIZ7 849 aa24.26■■□□□ 1.47
SHMT1-209ENST00000582653 ZNF467Q7Z7K2 595 aaPredicted RBP24.26■■□□□ 1.47
SHMT1-209ENST00000582653 RNF180Q86T96 592 aa24.26■■□□□ 1.47
SHMT1-209ENST00000582653 TICAM2Q86XR7 235 aa24.26■■□□□ 1.47
SHMT1-209ENST00000582653 ISY1Q9ULR0 285 aaKnown RBP24.26■■□□□ 1.47
SHMT1-209ENST00000582653 SMCHD1A6NHR9 2005 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 RANBP6O60518 1105 aaKnown RBP24.25■■□□□ 1.47
SHMT1-209ENST00000582653 SNAI1O95863 264 aaPredicted RBP24.25■■□□□ 1.47
SHMT1-209ENST00000582653 CHST13Q8NET6 341 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 CHURC1Q8WUH1 139 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 FERMT2Q96AC1 680 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 FBXO40Q9UH90 709 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 STX8Q9UNK0 236 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 PHF24Q9UPV7 400 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 SYNGAP1Q96PV0 1343 aa24.25■■□□□ 1.47
SHMT1-209ENST00000582653 TMEM232C9JQI7 657 aa24.24■■□□□ 1.47
SHMT1-209ENST00000582653 HSPD1P10809 573 aaKnown RBP24.24■■□□□ 1.47
SHMT1-209ENST00000582653 MCCP23508 829 aa24.24■■□□□ 1.47
SHMT1-209ENST00000582653 ANKRD35Q8N283 1001 aa24.24■■□□□ 1.47
SHMT1-209ENST00000582653 GMCL1Q96IK5 515 aa24.24■■□□□ 1.47
SHMT1-209ENST00000582653 FAM184BQ9ULE4 1060 aa24.24■■□□□ 1.47
SHMT1-209ENST00000582653 PLA2G6O60733 806 aa24.23■■□□□ 1.47
SHMT1-209ENST00000582653 PGK1P00558 417 aa24.23■■□□□ 1.47
SHMT1-209ENST00000582653 STAT2P52630 851 aa24.23■■□□□ 1.47
SHMT1-209ENST00000582653 FAM160B2Q86V87 743 aa24.23■■□□□ 1.47
SHMT1-209ENST00000582653 STAG1Q8WVM7 1258 aa24.23■■□□□ 1.47
SHMT1-209ENST00000582653 TOMM22Q9NS69 142 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms