RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ELP1O95163 1332 aa15.4■□□□□ 0.06
SS18-219ENST00000581570 MUC3AQ02505 3323 aa15.4■□□□□ 0.06
SS18-219ENST00000581570 SMCHD1A6NHR9 2005 aa15.39■□□□□ 0.05
SS18-219ENST00000581570 DUSP11O75319 330 aaKnown RBP15.39■□□□□ 0.05
SS18-219ENST00000581570 SNAI1O95863 264 aaPredicted RBP15.39■□□□□ 0.05
SS18-219ENST00000581570 RAB30Q15771 203 aa15.39■□□□□ 0.05
SS18-219ENST00000581570 PSRC1Q6PGN9 363 aaPredicted RBP15.39■□□□□ 0.05
SS18-219ENST00000581570 AACSQ86V21 672 aa15.39■□□□□ 0.05
SS18-219ENST00000581570 LCORLQ8N3X6 602 aa15.39■□□□□ 0.05
SS18-219ENST00000581570 ZHX1Q9UKY1 873 aaPredicted RBP15.39■□□□□ 0.05
SS18-219ENST00000581570 ZNF214Q9UL59 606 aaPredicted RBP15.39■□□□□ 0.05
SS18-219ENST00000581570 PPP1R9AQ9ULJ8 1098 aa15.39■□□□□ 0.05
SS18-219ENST00000581570 ZNF532Q9HCE3 1301 aa15.39■□□□□ 0.05
SS18-219ENST00000581570 MYADML2A6NDP7 307 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 ARVCFO00192 962 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 APBB1O00213 710 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 RAD21O60216 631 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 ASGR1P07306 291 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 C6orf222P0C671 652 aaPredicted RBP15.38■□□□□ 0.05
SS18-219ENST00000581570 EEF2P13639 858 aaKnown RBP15.38■□□□□ 0.05
SS18-219ENST00000581570 PCSK9Q8NBP7 692 aaKnown RBP15.38■□□□□ 0.05
SS18-219ENST00000581570 REPS2Q8NFH8 660 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 DDX11Q96FC9 970 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 PPP1R12CQ9BZL4 782 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 SPC25Q9HBM1 224 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 SYNGAP1Q96PV0 1343 aa15.38■□□□□ 0.05
SS18-219ENST00000581570 A0A0U1RQG5 324 aaPredicted RBP15.37■□□□□ 0.05
SS18-219ENST00000581570 TLR3O15455 904 aaKnown RBP15.37■□□□□ 0.05
SS18-219ENST00000581570 CST5P28325 142 aaPredicted RBP15.37■□□□□ 0.05
SS18-219ENST00000581570 CDK8P49336 464 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 IRX5P78411 483 aaPredicted RBP15.37■□□□□ 0.05
SS18-219ENST00000581570 FAM83BQ5T0W9 1011 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 ZKSCAN2Q63HK3 967 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 MAMDC4Q6UXC1 1216 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 TSPYL2Q9H2G4 693 aaPredicted RBP15.37■□□□□ 0.05
SS18-219ENST00000581570 NKX2-4Q9H2Z4 354 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 ARMT1Q9H993 441 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 KANSL2Q9H9L4 492 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 GOPCQ9HD26 462 aa15.37■□□□□ 0.05
SS18-219ENST00000581570 TCRBV5S4A2TA0A5A2 114 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 PRKAB2O43741 272 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 ABCB7O75027 752 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 ACVR2BQ13705 512 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 ERC1Q8IUD2 1116 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 HERVK_113Q902F9 699 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 MTIF3Q9H2K0 278 aaKnown RBP15.36■□□□□ 0.05
SS18-219ENST00000581570 SLC28A3Q9HAS3 691 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 IL23AQ9NPF7 189 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 ATP8A2Q9NTI2 1148 aa15.36■□□□□ 0.05
SS18-219ENST00000581570 DNAJC25-GNG10A0A024R161 153 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 SMIM22K7EJ46 135 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 GOLIM4O00461 696 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 FGBP02675 491 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 CYP2C18P33260 490 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 GJA9P57773 515 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 GNASQ5JWF2 1037 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 C12orf60Q5U649 245 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 SNRNP48Q6IEG0 339 aaKnown RBP15.35■□□□□ 0.05
SS18-219ENST00000581570 ZNF467Q7Z7K2 595 aaPredicted RBP15.35■□□□□ 0.05
SS18-219ENST00000581570 FAM126BQ8IXS8 530 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 AMOTL1Q8IY63 956 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 TEX13BQ9BXU2 312 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.35■□□□□ 0.05
SS18-219ENST00000581570 CXXC1Q9P0U4 656 aaPredicted RBP15.35■□□□□ 0.05
SS18-219ENST00000581570 EXOC6BQ9Y2D4 811 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 RIPK3Q9Y572 518 aa15.35■□□□□ 0.05
SS18-219ENST00000581570 ZNFX1Q9P2E3 1918 aaKnown RBP15.35■□□□□ 0.05
SS18-219ENST00000581570 CYP2D7A0A087X1C5 515 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 SLC4A3P48751 1232 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 CCDC144BQ3MJ40 725 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 C16orf86Q6ZW13 317 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 DNAJC2Q99543 621 aaKnown RBP15.34■□□□□ 0.05
SS18-219ENST00000581570 SLF1Q9BQI6 1058 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 C1QTNF1Q9BXJ1 281 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 UPF3AQ9H1J1 476 aaKnown RBP15.34■□□□□ 0.05
SS18-219ENST00000581570 ABHD16BQ9H3Z7 469 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 IL1RAPL2Q9NP60 686 aa15.34■□□□□ 0.05
SS18-219ENST00000581570 YBX2Q9Y2T7 364 aaKnown RBP15.34■□□□□ 0.05
SS18-219ENST00000581570 NAV1Q8NEY1 1877 aa15.33■□□□□ 0.05
SS18-219ENST00000581570 USP17L12C9JPN9 530 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 USP17L21D6R901 530 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 ADCY6O43306 1168 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 MBD4O95243 580 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 CD4P01730 458 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 BMP1P13497 986 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 ITPRIPQ8IWB1 547 aa15.33■□□□□ 0.04
SS18-219ENST00000581570 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.33■□□□□ 0.04
SS18-219ENST00000581570 NECAB3Q96P71 396 aaPredicted RBP15.33■□□□□ 0.04
SS18-219ENST00000581570 SLFNL1Q499Z3 407 aa15.32■□□□□ 0.04
SS18-219ENST00000581570 CEP85Q6P2H3 762 aa15.32■□□□□ 0.04
SS18-219ENST00000581570 OTOP2Q7RTS6 562 aa15.32■□□□□ 0.04
SS18-219ENST00000581570 FTSJ3Q8IY81 847 aaKnown RBP15.32■□□□□ 0.04
SS18-219ENST00000581570 CPXCR1Q8N123 301 aa15.32■□□□□ 0.04
SS18-219ENST00000581570 MICALL1Q8N3F8 863 aa15.32■□□□□ 0.04
SS18-219ENST00000581570 DDRGK1Q96HY6 314 aa15.32■□□□□ 0.04
SS18-219ENST00000581570 NUP88Q99567 741 aaPredicted RBP15.32■□□□□ 0.04
SS18-219ENST00000581570 CTDP1Q9Y5B0 961 aaPredicted RBP15.32■□□□□ 0.04
SS18-219ENST00000581570 PLXNA1Q9UIW2 1896 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 ZBED4O75132 1171 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 RABGGTBP53611 331 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms