RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 HEATR3Q7Z4Q2 680 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 HOMER1Q86YM7 354 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 GPC2Q8N158 579 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 LINC00301Q8NCQ3 95 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 BICD2Q8TD16 824 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 TRPM4Q8TD43 1214 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 DCAF4Q8WV16 495 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 RRP36Q96EU6 259 aaKnown RBP12.1□□□□□ -0.47
SS18-217ENST00000580958 TEPSINQ96N21 525 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 PIGSQ96S52 555 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 RIOX1Q9H6W3 641 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 BRMS1Q9HCU9 246 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 SH3GLB2Q9NR46 395 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 ZBTB21Q9ULJ3 1066 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 ISY1Q9ULR0 285 aaKnown RBP12.1□□□□□ -0.47
SS18-217ENST00000580958 SMCHD1A6NHR9 2005 aa12.1□□□□□ -0.47
SS18-217ENST00000580958 FAM205CA6NFA0 338 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 STXBP3O00186 592 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 SPTLC2O15270 562 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 RAD21O60216 631 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 TOB1P50616 345 aaPredicted RBP12.09□□□□□ -0.47
SS18-217ENST00000580958 CCDC183Q5T5S1 534 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 TYW1BQ6NUM6 668 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 KCTD1Q719H9 257 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 CCDC148Q8NFR7 591 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 TNFRSF25Q93038 417 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 SEC63Q9UGP8 760 aaKnown RBP12.09□□□□□ -0.47
SS18-217ENST00000580958 PHIPQ8WWQ0 1821 aa12.09□□□□□ -0.47
SS18-217ENST00000580958 MYH7BA7E2Y1 1941 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 ADAMTS3O15072 1205 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 NDUFB10O96000 172 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 CALML3P27482 149 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 EPS15P42566 896 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 ME1P48163 572 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 ZNF445P59923 1031 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 MAP3K10Q02779 954 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 PTPAQ15257 358 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 NOM1Q5C9Z4 860 aaKnown RBP12.08□□□□□ -0.48
SS18-217ENST00000580958 EARS2Q5JPH6 523 aaKnown RBP12.08□□□□□ -0.48
SS18-217ENST00000580958 GPATCH4Q5T3I0 446 aaKnown RBP12.08□□□□□ -0.48
SS18-217ENST00000580958 APOBEC3FQ8IUX4 373 aaKnown RBP12.08□□□□□ -0.48
SS18-217ENST00000580958 CCAR1Q8IX12 1150 aaKnown RBP12.08□□□□□ -0.48
SS18-217ENST00000580958 KCNG4Q8TDN1 519 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 ARHGEF10LQ9HCE6 1279 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 BARHL2Q9NY43 387 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.08□□□□□ -0.48
SS18-217ENST00000580958 PCDHA7Q9UN72 937 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 PCDHA4Q9UN74 947 aa12.08□□□□□ -0.48
SS18-217ENST00000580958 A0A1W2PRG0 241 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 SYCE3A1L190 88 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 F5H6K3 240 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 DDNO94850 711 aaPredicted RBP12.07□□□□□ -0.48
SS18-217ENST00000580958 ATP2B1P20020 1258 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 SLC16A2P36021 539 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 CAP2P40123 477 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 SLC1A4P43007 532 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 NAPAP54920 295 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 KLRC3Q07444 240 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 SLC39A14Q15043 492 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 RILPL1Q5EBL4 403 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 ANGEL2Q5VTE6 544 aaKnown RBP12.07□□□□□ -0.48
SS18-217ENST00000580958 C9orf131Q5VYM1 1079 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 IFNL1Q8IU54 200 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 ADGRF4Q8IZF3 695 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 BLIDQ8IZY5 108 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 FSIP1Q8NA03 581 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 DAGLBQ8NCG7 672 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 GMCL1P1Q8NEA9 526 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 ACER1Q8TDN7 264 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 NUP88Q99567 741 aaPredicted RBP12.07□□□□□ -0.48
SS18-217ENST00000580958 DEFB129Q9H1M3 183 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 JMJD4Q9H9V9 463 aa12.07□□□□□ -0.48
SS18-217ENST00000580958 FSD2A1L4K1 749 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 GOLGA6L3A6NEY3 463 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 PHF20L1A8MW92 1017 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 USP17L10C9JJH3 530 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 MARCKSP29966 332 aaPredicted RBP12.06□□□□□ -0.48
SS18-217ENST00000580958 ECE1P42892 770 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 HIRAP54198 1017 aaPredicted RBP12.06□□□□□ -0.48
SS18-217ENST00000580958 NBPF12Q5TAG4 269 aaPredicted RBP12.06□□□□□ -0.48
SS18-217ENST00000580958 GAS2L3Q86XJ1 694 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 FAM177A1Q8N128 213 aaPredicted RBP12.06□□□□□ -0.48
SS18-217ENST00000580958 RASGRP4Q8TDF6 673 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 CCDC12Q8WUD4 166 aaPredicted RBP12.06□□□□□ -0.48
SS18-217ENST00000580958 GOLPH3LQ9H4A5 285 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 GGA3Q9NZ52 723 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 NOL7Q9UMY1 257 aaKnown RBP12.06□□□□□ -0.48
SS18-217ENST00000580958 PCDHB6Q9Y5E3 794 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 PARP14Q460N5 1801 aa12.06□□□□□ -0.48
SS18-217ENST00000580958 OTOFQ9HC10 1997 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 PNMA6FA0A0J9YX94 578 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 A0A1W2PQ27 194 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 A0A1W2PQ64 194 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 A0A1W2PQD8 194 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 SMCO2A6NFE2 343 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 TRIM75PA6NK02 468 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 hCG_1984214I3L0E3 225 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 PPP6R2O75170 966 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 NR1I2O75469 434 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 BMP3P12645 472 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms