RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 TTC6Q86TZ1 520 aa11.92□□□□□ -0.5
SS18-207ENST00000577636 NEK1Q96PY6 1258 aa11.92□□□□□ -0.5
SS18-207ENST00000577636 MOV10L1Q9BXT6 1211 aaKnown RBP11.92□□□□□ -0.5
SS18-207ENST00000577636 KIAA1683Q9H0B3 1180 aa11.92□□□□□ -0.5
SS18-207ENST00000577636 ZNF213O14771 459 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 HOXC6P09630 235 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 CYBAP13498 195 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 FOSL2P15408 326 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 ERCC3P19447 782 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 PLCD1P51178 756 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 AK2P54819 239 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 NUCB2P80303 420 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 TRDNQ13061 729 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 SEPT2Q15019 361 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 NOL8Q76FK4 1167 aaKnown RBP11.91□□□□□ -0.5
SS18-207ENST00000577636 NCAPG2Q86XI2 1143 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 CHMP4CQ96CF2 233 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 INTS4Q96HW7 963 aaKnown RBP11.91□□□□□ -0.5
SS18-207ENST00000577636 TMX3Q96JJ7 454 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 TANGO6Q9C0B7 1094 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 PUS7LQ9H0K6 701 aaKnown RBP11.91□□□□□ -0.5
SS18-207ENST00000577636 SH2B1Q9NRF2 756 aaPredicted RBP11.91□□□□□ -0.5
SS18-207ENST00000577636 FOXD4L1Q9NU39 408 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.91□□□□□ -0.5
SS18-207ENST00000577636 UNC80Q8N2C7 3258 aa11.91□□□□□ -0.5
SS18-207ENST00000577636 TRIM43BA6NCK2 446 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 COBLO75128 1261 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 CHGBP05060 677 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 COG2Q14746 738 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 ADCK5Q3MIX3 580 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.5
SS18-207ENST00000577636 TRIM43Q96BQ3 446 aaPredicted RBP11.9□□□□□ -0.5
SS18-207ENST00000577636 SPATC1LQ9H0A9 340 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 ALDH8A1Q9H2A2 487 aaPredicted RBP11.9□□□□□ -0.5
SS18-207ENST00000577636 TTYH1Q9H313 450 aaPredicted RBP11.9□□□□□ -0.5
SS18-207ENST00000577636 SLC5A4Q9NY91 659 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 HOXC10Q9NYD6 342 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 SIPA1L1O43166 1804 aa11.9□□□□□ -0.5
SS18-207ENST00000577636 MAGEB6P1A0A0J9YX57 407 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 TCRBV5S4A2TA0A5A2 114 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 PATL2C9JE40 543 aaKnown RBP11.89□□□□□ -0.51
SS18-207ENST00000577636 SEPT4O43236 478 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 STRNO43815 780 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 MBD4O95243 580 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 CYP21A2P08686 494 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 GUCY1A2P33402 732 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 SHMT1P34896 483 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 SMAD3P84022 425 aaKnown RBP11.89□□□□□ -0.51
SS18-207ENST00000577636 TLE2Q04725 743 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 NBR1Q14596 966 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 LRRC41Q15345 812 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 SLFNL1Q499Z3 407 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 FAM47AQ5JRC9 791 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 OLFML2BQ68BL8 750 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 LBX2Q6XYB7 198 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 RNPC3Q96LT9 517 aaKnown RBP11.89□□□□□ -0.51
SS18-207ENST00000577636 TTC14Q96N46 770 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 NAPBQ9H115 298 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 EHD4Q9H223 541 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 PRDM6Q9NQX0 595 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 PDLIM7Q9NR12 457 aa11.89□□□□□ -0.51
SS18-207ENST00000577636 ZMYM6O95789 1325 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 A0A1W2PRG0 241 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 TDO2P48775 406 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 EVX2Q03828 476 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 CUL4AQ13619 759 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 DHX32Q7L7V1 743 aaKnown RBP11.88□□□□□ -0.51
SS18-207ENST00000577636 SPICE1Q8N0Z3 855 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 PPM1EQ8WY54 764 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 GBP4Q96PP9 640 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 STRBPQ96SI9 672 aaKnown RBP11.88□□□□□ -0.51
SS18-207ENST00000577636 MCM9Q9NXL9 1143 aa11.88□□□□□ -0.51
SS18-207ENST00000577636 E7EWF7 191 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 PQBP1O60828 265 aaKnown RBP11.87□□□□□ -0.51
SS18-207ENST00000577636 FLOT1O75955 427 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 PGK1P00558 417 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 FGAP02671 866 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 RAG1P15918 1043 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 PTMSP20962 102 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 ITGB8P26012 769 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 DSG3P32926 999 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 ALX1Q15699 326 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 KIAA1755Q5JYT7 1200 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 CERS3Q8IU89 383 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 NCOA7Q8NI08 942 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 SYMPKQ92797 1274 aaKnown RBP11.87□□□□□ -0.51
SS18-207ENST00000577636 ARMT1Q9H993 441 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 XPNPEP3Q9NQH7 507 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 TACC3Q9Y6A5 838 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 SLC4A4Q9Y6R1 1079 aa11.87□□□□□ -0.51
SS18-207ENST00000577636 CUL9Q8IWT3 2517 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 GOLGA6L22H0YM25 854 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 RAD21O60216 631 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 CLTBP09497 229 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 CYP2D6P10635 497 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 RARBP10826 455 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 FCER1AP12319 257 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 PDIA4P13667 645 aaKnown RBP11.86□□□□□ -0.51
SS18-207ENST00000577636 CPA1P15085 419 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms