RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 HERC6Q8IVU3 1022 aa20.1■□□□□ 0.81
VPS53-218ENST00000575207 ACER1Q8TDN7 264 aa20.1■□□□□ 0.81
VPS53-218ENST00000575207 EDAQ92838 391 aa20.1■□□□□ 0.81
VPS53-218ENST00000575207 ATOH1Q92858 354 aaPredicted RBP20.1■□□□□ 0.81
VPS53-218ENST00000575207 NSUN4Q96CB9 384 aaKnown RBP20.1■□□□□ 0.81
VPS53-218ENST00000575207 AGBL1Q96MI9 1066 aa20.1■□□□□ 0.81
VPS53-218ENST00000575207 UPF3AQ9H1J1 476 aaKnown RBP20.1■□□□□ 0.81
VPS53-218ENST00000575207 PLXNA3P51805 1871 aa20.09■□□□□ 0.81
VPS53-218ENST00000575207 GSTO1P78417 241 aa20.09■□□□□ 0.81
VPS53-218ENST00000575207 PBXIP1Q96AQ6 731 aa20.09■□□□□ 0.81
VPS53-218ENST00000575207 SCLYQ96I15 445 aa20.09■□□□□ 0.81
VPS53-218ENST00000575207 MUTYHQ9UIF7 546 aa20.09■□□□□ 0.81
VPS53-218ENST00000575207 FAM50BQ9Y247 325 aa20.09■□□□□ 0.81
VPS53-218ENST00000575207 PGK2P07205 417 aa20.08■□□□□ 0.81
VPS53-218ENST00000575207 RFX5P48382 616 aaPredicted RBP20.08■□□□□ 0.81
VPS53-218ENST00000575207 GJA9P57773 515 aa20.08■□□□□ 0.81
VPS53-218ENST00000575207 SUGP1Q8IWZ8 645 aaKnown RBP20.08■□□□□ 0.81
VPS53-218ENST00000575207 SH3RF3Q8TEJ3 882 aaPredicted RBP20.08■□□□□ 0.81
VPS53-218ENST00000575207 SPC25Q9HBM1 224 aa20.08■□□□□ 0.81
VPS53-218ENST00000575207 CHD6Q8TD26 2715 aa20.08■□□□□ 0.8
VPS53-218ENST00000575207 WDR87Q6ZQQ6 2873 aa20.07■□□□□ 0.8
VPS53-218ENST00000575207 ACACBO00763 2458 aa20.07■□□□□ 0.8
VPS53-218ENST00000575207 ATRXP46100 2492 aa20.07■□□□□ 0.8
VPS53-218ENST00000575207 GNASQ5JWF2 1037 aa20.07■□□□□ 0.8
VPS53-218ENST00000575207 MSL3Q8N5Y2 521 aaKnown RBP20.07■□□□□ 0.8
VPS53-218ENST00000575207 SEZ6LQ9BYH1 1024 aa20.07■□□□□ 0.8
VPS53-218ENST00000575207 SUGCTQ9HAC7 445 aa20.07■□□□□ 0.8
VPS53-218ENST00000575207 MED19A0JLT2 244 aaPredicted RBP20.06■□□□□ 0.8
VPS53-218ENST00000575207 TMEM221A6NGB7 291 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 H3BQ06 376 aaPredicted RBP20.06■□□□□ 0.8
VPS53-218ENST00000575207 M0R296 226 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 SNAI1O95863 264 aaPredicted RBP20.06■□□□□ 0.8
VPS53-218ENST00000575207 ACTN1P12814 892 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 NKX3-2P78367 333 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 PLS1Q14651 629 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 TATDN1Q6P1N9 297 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 MMP19Q99542 508 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 TRPC6Q9Y210 931 aa20.06■□□□□ 0.8
VPS53-218ENST00000575207 DMXL1Q9Y485 3027 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 VAMP4O75379 141 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 SLC25A27O95847 323 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 SLC4A10Q6U841 1118 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 TRIM67Q6ZTA4 783 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 FBXL6Q8N531 539 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 CEP126Q9P2H0 1117 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 PALD1Q9ULE6 856 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 KMT2EQ8IZD2 1858 aa20.05■□□□□ 0.8
VPS53-218ENST00000575207 PRR23AA6NEV1 266 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 CTAGE5O15320 804 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 ADCY6O43306 1168 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 ADORA1P30542 326 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 DSG3P32926 999 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 RAB3GAP1Q15042 981 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
VPS53-218ENST00000575207 TRPV6Q9H1D0 765 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 FBXO3Q9UK99 471 aa20.04■□□□□ 0.8
VPS53-218ENST00000575207 FLT1P17948 1338 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 B4GALT4O60513 344 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 ITGA7Q13683 1181 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 KCTD2Q14681 263 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 ATF7IPQ6VMQ6 1270 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 RNF135Q8IUD6 432 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 MAPKAPK5Q8IW41 473 aa20.03■□□□□ 0.8
VPS53-218ENST00000575207 ZHX1Q9UKY1 873 aaPredicted RBP20.03■□□□□ 0.8
VPS53-218ENST00000575207 GRIN2DO15399 1336 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 LCHNA4D1U4 455 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 SOWAHBA6NEL2 793 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 CABYRO75952 493 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 MAMDC4Q6UXC1 1216 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 DEFB128Q7Z7B8 93 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 TGFBRAP1Q8WUH2 860 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 COL4A6Q14031 1691 aa20.02■□□□□ 0.8
VPS53-218ENST00000575207 ZNF292O60281 2723 aa20.02■□□□□ 0.79
VPS53-218ENST00000575207 CIAO1O76071 339 aa20.01■□□□□ 0.79
VPS53-218ENST00000575207 HLA-DOAP06340 250 aa20.01■□□□□ 0.79
VPS53-218ENST00000575207 ERVK-21P61565 698 aa20.01■□□□□ 0.79
VPS53-218ENST00000575207 COL19A1Q14993 1142 aa20.01■□□□□ 0.79
VPS53-218ENST00000575207 POP1Q99575 1024 aaKnown RBP20.01■□□□□ 0.79
VPS53-218ENST00000575207 FSD1Q9BTV5 496 aa20.01■□□□□ 0.79
VPS53-218ENST00000575207 TANGO6Q9C0B7 1094 aa20.01■□□□□ 0.79
VPS53-218ENST00000575207 SIL1Q9H173 461 aa20■□□□□ 0.79
VPS53-218ENST00000575207 CDK5RAP2Q96SN8 1893 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 PLCG2P16885 1265 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 PPP4CP60510 307 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 ACVR2BQ13705 512 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 TMEM132BQ14DG7 1078 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 CXCL17Q6UXB2 119 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 ATG4CQ96DT6 458 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 PABPC5Q96DU9 382 aaKnown RBP19.99■□□□□ 0.79
VPS53-218ENST00000575207 CNTNAP3BQ96NU0 1288 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 TGS1Q96RS0 853 aaKnown RBP19.99■□□□□ 0.79
VPS53-218ENST00000575207 CNTNAP3Q9BZ76 1288 aa19.99■□□□□ 0.79
VPS53-218ENST00000575207 H0Y858 1186 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 BAG3O95817 575 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 RFC2P35250 354 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 NBL1P41271 181 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 SMAD2Q15796 467 aaKnown RBP19.98■□□□□ 0.79
VPS53-218ENST00000575207 ABCB5Q2M3G0 1257 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 RIOX2Q8IUF8 465 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 NOL10Q9BSC4 688 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms