RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 EYA3Q99504 573 aa9.9□□□□□ -0.82
LINC00558-201ENST00000569422 CD209Q9NNX6 404 aa9.9□□□□□ -0.82
LINC00558-201ENST00000569422 PLCH1Q4KWH8 1693 aa9.9□□□□□ -0.82
LINC00558-201ENST00000569422 TRIM49BA6NDI0 452 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 PPP1R3GB7ZBB8 358 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 KIF2AO00139 706 aaPredicted RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 N4BP3O15049 544 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 ARHGAP6O43182 974 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 BMP15O95972 392 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CASP14P31944 242 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 TXLNAP40222 546 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 FBXO38Q6PIJ6 1188 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 DTHD1Q6ZMT9 781 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 ERO1AQ96HE7 468 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 MXD3Q9BW11 206 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CARD6Q9BX69 1037 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 PCDHA4Q9UN74 947 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 AKR1B15C9JRZ8 316 aaPredicted RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 FANCGO15287 622 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 ZSCAN12O43309 604 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 SERPINB2P05120 415 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 UBA7P41226 1012 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CDK8P49336 464 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 GTF2IP78347 998 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 NR1I3Q14994 352 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CCDC96Q2M329 555 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 FILIP1LQ4L180 1135 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 JAKMIP3Q5VZ66 844 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 TMEM139Q8IV31 216 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 WDR24Q96S15 920 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 GGA1Q9UJY5 639 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 LEMD3Q9Y2U8 911 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 AHDC1Q5TGY3 1603 aaPredicted RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CCNT1O60563 726 aaKnown RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 RASA1P20936 1047 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CALML3P27482 149 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 ERCC5P28715 1186 aaPredicted RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 ARHGAP29Q52LW3 1261 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 DGKHQ86XP1 1220 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 NME8Q8N427 588 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 SPATA20Q8TB22 786 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 GSDMAQ96QA5 445 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 CGNQ9P2M7 1197 aaKnown RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 BIN2Q9UBW5 565 aaPredicted RBP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 PCDHA6Q9UN73 950 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 PCDHA8Q9Y5H6 950 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.89□□□□□ -0.83
LINC00558-201ENST00000569422 DUOX1Q9NRD9 1551 aa9.89□□□□□ -0.83
LINC00558-201ENST00000569422 ERCC3P19447 782 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 GSTO1P78417 241 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 TRIM65Q6PJ69 517 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 GPIHBP1Q8IV16 184 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 LRRC47Q8N1G4 583 aaKnown RBP9.88□□□□□ -0.83
LINC00558-201ENST00000569422 NELFBQ8WX92 580 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 CACNA1SQ13698 1873 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 PHLPP1O60346 1717 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 RPN1P04843 607 aaKnown RBP9.88□□□□□ -0.83
LINC00558-201ENST00000569422 LDHCP07864 332 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 CASQ1P31415 396 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 SH3RF1Q7Z6J0 888 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 CEP95Q96GE4 821 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 NUP88Q99567 741 aaPredicted RBP9.88□□□□□ -0.83
LINC00558-201ENST00000569422 ZNF219Q9P2Y4 722 aaPredicted RBP9.88□□□□□ -0.83
LINC00558-201ENST00000569422 POLLQ9UGP5 575 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 MKRN1Q9UHC7 482 aaKnown RBP9.88□□□□□ -0.83
LINC00558-201ENST00000569422 TIAM2Q8IVF5 1701 aa9.88□□□□□ -0.83
LINC00558-201ENST00000569422 SMCO2A6NFE2 343 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 PRCPP42785 496 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 SCNN1DP51172 638 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 TBX2Q13207 712 aaPredicted RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 E2F4Q16254 413 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 DOK7Q18PE1 504 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 CCDC12Q8WUD4 166 aaPredicted RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 UBXN4Q92575 508 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 PIGSQ96S52 555 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 RTFDC1Q9BY42 306 aaPredicted RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 A0A1B0GTH6 734 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 USP17L5A8MUK1 530 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 CCP110O43303 1012 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 PARP1P09874 1014 aaKnown RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 TECP42680 631 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 FXR1P51114 621 aaKnown RBP eCLIP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 ST5P78524 1137 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 PAK1Q13153 545 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 GRM4Q14833 912 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 KRT31Q15323 416 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 PDXDC2PQ6P474 469 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 ELOA2Q8IYF1 753 aaPredicted RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 SEPT12Q8IYM1 358 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 COA7Q96BR5 231 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 MRPL44Q9H9J2 332 aaKnown RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 GPCPD1Q9NPB8 672 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 TMEM260Q9NX78 707 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 DOCK2Q92608 1830 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 STX10O60499 249 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 SOGA3Q5TF21 947 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 RAD9BQ6WBX8 426 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 HPS3Q969F9 1004 aa9.87□□□□□ -0.83
LINC00558-201ENST00000569422 ADD3Q9UEY8 706 aaKnown RBP9.87□□□□□ -0.83
LINC00558-201ENST00000569422 SEC63Q9UGP8 760 aaKnown RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms