RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 FOXB2Q5VYV0 432 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 CCDC174Q6PII3 467 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 NXPE4Q6UWF7 544 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 CCDC81Q6ZN84 652 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 KRT77Q7Z794 578 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 MORC1Q86VD1 984 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 NIM1KQ8IY84 436 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 TEX19Q8NA77 164 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 PHC3Q8NDX5 983 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 ARMC2Q8NEN0 867 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 PJA1Q8NG27 643 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 ANKRD24Q8TF21 1146 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 SRRTQ9BXP5 876 aaKnown RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 ALDH8A1Q9H2A2 487 aaPredicted RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 OSBPL3Q9H4L5 887 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 IFT122Q9HBG6 1241 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 C9orf78Q9NZ63 289 aaPredicted RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 FOXD3Q9UJU5 478 aaPredicted RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 NOB1Q9ULX3 412 aaKnown RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 MAPK8IP1Q9UQF2 711 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 BCS1LQ9Y276 419 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 CHD8Q9HCK8 2581 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 CNTNAP1P78357 1384 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 KDM2BQ8NHM5 1336 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 CEP152O94986 1710 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 CDC42BPAQ5VT25 1732 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 ADGRL3Q9HAR2 1447 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 MYO5BQ9ULV0 1848 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 MINDY4BA8MYZ0 360 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 B2RBV5 119 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 PLSCR1O15162 318 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 SLC26A4O43511 780 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 RBP3P10745 1247 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 SDSP20132 328 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 GTF2A2P52657 109 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 JAG1P78504 1218 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 PABPC4Q13310 644 aaKnown RBP eCLIP3.73□□□□□ -1.81
VPS35-209ENST00000568642 DGKZQ13574 1117 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 BRD3Q15059 726 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 DACT2Q5SW24 774 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 PPP4R4Q6NUP7 873 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 CHSY3Q70JA7 882 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 CBARPQ8N350 705 aaPredicted RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 NKAPQ8N5F7 415 aaKnown RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 ZDHHC1Q8WTX9 485 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 C7orf43Q8WVR3 580 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 JPH3Q8WXH2 748 aaPredicted RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 NELL1Q92832 810 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 KISS1RQ969F8 398 aaPredicted RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 SLC10A4Q96EP9 437 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 CDC5LQ99459 802 aaKnown RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 ARHGAP9Q9BRR9 750 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 ESYT1Q9BSJ8 1104 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 TARS2Q9BW92 718 aaKnown RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 LRRC27Q9C0I9 530 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 ZHX3Q9H4I2 956 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 ETNK1Q9HBU6 452 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 SCHIP1Q9P0W5 487 aaPredicted RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 PUF60Q9UHX1 559 aaKnown RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 CTDP1Q9Y5B0 961 aaPredicted RBP3.73□□□□□ -1.81
VPS35-209ENST00000568642 PCDHB11Q9Y5F2 797 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 KAT6BQ8WYB5 2073 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 KCPQ6ZWJ8 1503 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 FYCO1Q9BQS8 1478 aa3.73□□□□□ -1.81
VPS35-209ENST00000568642 TUBGCP6Q96RT7 1819 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 NEURL1BA8MQ27 555 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 EML1O00423 815 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 CPNE3O75131 537 aaKnown RBP3.72□□□□□ -1.81
VPS35-209ENST00000568642 RHOBTB3O94955 611 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 MYL3P08590 195 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 BMP4P12644 408 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ELNP15502 786 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ZAP70P43403 619 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 GDF10P55107 478 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 RBM10P98175 930 aaKnown RBP3.72□□□□□ -1.81
VPS35-209ENST00000568642 CTBSQ01459 385 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 MAP2K1Q02750 393 aaPredicted RBP3.72□□□□□ -1.81
VPS35-209ENST00000568642 KRT72Q14CN4 511 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 PERM1Q5SV97 790 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 KIAA0319Q5VV43 1072 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ARMC3Q5W041 872 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 CREBRFQ8IUR6 639 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 PDILTQ8N807 584 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ABTB2Q8N961 1025 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.72□□□□□ -1.81
VPS35-209ENST00000568642 IL17REQ8NFR9 667 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 YIPF4Q9BSR8 244 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 KRTAP9-8Q9BYQ0 159 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 BCO2Q9BYV7 579 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 RSPH9Q9H1X1 276 aaPredicted RBP3.72□□□□□ -1.81
VPS35-209ENST00000568642 CHRDQ9H2X0 955 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ZFYVE28Q9HCC9 887 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 DDX21Q9NR30 783 aaKnown RBP eCLIP3.72□□□□□ -1.81
VPS35-209ENST00000568642 FNIP2Q9P278 1114 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 POLG2Q9UHN1 485 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 PFDN2Q9UHV9 154 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 ASAP1Q9ULH1 1129 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 TLR6Q9Y2C9 796 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 PCDHGB3Q9Y5G1 929 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 HRH3Q9Y5N1 445 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms