RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RTP1P59025 263 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 RBM10P98175 930 aaKnown RBP4.92□□□□□ -1.62
VPS35-207ENST00000568191 FANCCQ00597 558 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 KCNA10Q16322 511 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 ZNF605Q86T29 641 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 C7orf61Q8IZ16 206 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 TAB3Q8N5C8 712 aaPredicted RBP4.92□□□□□ -1.62
VPS35-207ENST00000568191 ZNF512BQ96KM6 892 aaPredicted RBP4.92□□□□□ -1.62
VPS35-207ENST00000568191 FCRL2Q96LA5 508 aaPredicted RBP4.92□□□□□ -1.62
VPS35-207ENST00000568191 SLC9A7Q96T83 725 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 CDADC1Q9BWV3 514 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 ZNF552Q9H707 407 aaPredicted RBP4.92□□□□□ -1.62
VPS35-207ENST00000568191 SUCOQ9UBS9 1254 aaKnown RBP4.92□□□□□ -1.62
VPS35-207ENST00000568191 SLC12A7Q9Y666 1083 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 TAF6LQ9Y6J9 622 aa4.92□□□□□ -1.62
VPS35-207ENST00000568191 NPIPB6E9PJ23 425 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 RFXAPO00287 272 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 ETV2O00321 342 aaPredicted RBP4.91□□□□□ -1.62
VPS35-207ENST00000568191 MEIS1O00470 390 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 NRDCO43847 1150 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 PSPNO60542 156 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 USP2O75604 605 aaPredicted RBP4.91□□□□□ -1.62
VPS35-207ENST00000568191 MPOP05164 745 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 PNLIPP16233 465 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 VAMP1P23763 118 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 BMP8BP34820 402 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 PMS1P54277 932 aaKnown RBP4.91□□□□□ -1.62
VPS35-207ENST00000568191 LAPTM5Q13571 262 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 TCEAL1Q15170 157 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 ADGRF1Q5T601 910 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 TMEM192Q8IY95 271 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 NAT16Q8N8M0 369 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 ANTXR1Q9H6X2 564 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 SIRT5Q9NXA8 310 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 GFOD1Q9NXC2 390 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 SMG5Q9UPR3 1016 aaKnown RBP4.91□□□□□ -1.62
VPS35-207ENST00000568191 ZNF281Q9Y2X9 895 aa4.91□□□□□ -1.62
VPS35-207ENST00000568191 TEX51A0A1B0GUA7 166 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 A0A1W2PQ45 241 aaPredicted RBP4.9□□□□□ -1.63
VPS35-207ENST00000568191 A0A1W2PQY0 241 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 NUAK1O60285 661 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 ZSCAN22P10073 491 aaPredicted RBP4.9□□□□□ -1.63
VPS35-207ENST00000568191 CFPP27918 469 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 DLG4P78352 724 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 SNW1Q13573 536 aaKnown RBP4.9□□□□□ -1.63
VPS35-207ENST00000568191 TIGD5Q53EQ6 642 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 ZNF394Q53GI3 561 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 FBLN7Q53RD9 439 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 NLRX1Q86UT6 975 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 SIRT2Q8IXJ6 389 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 SP110Q9HB58 689 aa4.9□□□□□ -1.63
VPS35-207ENST00000568191 DDX41Q9UJV9 622 aaKnown RBP4.9□□□□□ -1.63
VPS35-207ENST00000568191 SF3B6Q9Y3B4 125 aaKnown RBP4.9□□□□□ -1.63
VPS35-207ENST00000568191 A0A1W2PQJ5 194 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 FAM86C2PA6NEL3 165 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 HRKO00198 91 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 VAV1P15498 845 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 GUCY2CP25092 1073 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 ANKRD39Q53RE8 183 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 ZNF385BQ569K4 471 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 HLA-DQA1Q5Y7H0 255 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 JAMLQ86YT9 394 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 TMEM151BQ8IW70 566 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 RBBP8NLQ8NC74 664 aaPredicted RBP4.89□□□□□ -1.63
VPS35-207ENST00000568191 OR6P1Q8NGX9 317 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 HHIPL1Q96JK4 782 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 G6PC3Q9BUM1 346 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 CD320Q9NPF0 282 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 CNOT6Q9ULM6 557 aaKnown RBP4.89□□□□□ -1.63
VPS35-207ENST00000568191 PCDHGB7Q9Y5F8 929 aa4.89□□□□□ -1.63
VPS35-207ENST00000568191 TMEM82A0PJX8 343 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 RBAK-RBAKDNI3L0D1 243 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 ZNF205O95201 554 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 ITGA4P13612 1032 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 EIF6P56537 245 aaKnown RBP4.88□□□□□ -1.63
VPS35-207ENST00000568191 LINC00310P59036 64 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 CYP4F8P98187 520 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 POU4F1Q01851 419 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 CPLX3Q8WVH0 158 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 MCOLN1Q9GZU1 580 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 KCNK12Q9HB15 430 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 EBF1Q9UH73 591 aa4.88□□□□□ -1.63
VPS35-207ENST00000568191 A0A087WZG4 1122 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 FADS2P1A8MWK0 482 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 TBC1D8O95759 1140 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 TP53P04637 393 aaPredicted RBP4.87□□□□□ -1.63
VPS35-207ENST00000568191 GSTM1P09488 218 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 SRSF3P84103 164 aaKnown RBP4.87□□□□□ -1.63
VPS35-207ENST00000568191 PAK2Q13177 524 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 LDLRAD1Q5T700 205 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 CYP2R1Q6VVX0 501 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 UNC5AQ6ZN44 842 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 AMIGO3Q86WK7 504 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 SHISA4Q96DD7 197 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 KRTAP4-9Q9BYQ8 210 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 GBP3Q9H0R5 595 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 PHAXQ9H814 394 aaKnown RBP4.87□□□□□ -1.63
VPS35-207ENST00000568191 PPT2Q9UMR5 302 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 DIS3Q9Y2L1 958 aaKnown RBP4.87□□□□□ -1.63
VPS35-207ENST00000568191 GPR55Q9Y2T6 319 aaPredicted RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms