RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 NCAPG2Q86XI2 1143 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 TBC1D10CQ8IV04 446 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 USP6NLQ92738 828 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 APBA2Q99767 749 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 C22orf23Q9BZE7 217 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 NBPF3Q9H094 633 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 U3KPZ7 1027 aaPredicted RBP15.78■□□□□ 0.12
CLK3-218ENST00000566926 PLXNA1Q9UIW2 1896 aa15.78■□□□□ 0.12
CLK3-218ENST00000566926 NMT2O60551 498 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 PLA2G6O60733 806 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 GJB1P08034 283 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 ZKSCAN1P17029 563 aaPredicted RBP15.77■□□□□ 0.12
CLK3-218ENST00000566926 MCCP23508 829 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 RBM25P49756 843 aaKnown RBP15.77■□□□□ 0.12
CLK3-218ENST00000566926 TRDNQ13061 729 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 IKQ13123 557 aaPredicted RBP15.77■□□□□ 0.12
CLK3-218ENST00000566926 GRB14Q14449 540 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 MTFR1Q15390 333 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 RCSD1Q6JBY9 416 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 RIOX2Q8IUF8 465 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 ABRAQ8N0Z2 381 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 DCAF4Q8WV16 495 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 KIFC2Q96AC6 838 aa15.77■□□□□ 0.12
CLK3-218ENST00000566926 TMEM232C9JQI7 657 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 HOXC6P09630 235 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 FCER1AP12319 257 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 DPP9Q86TI2 863 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 DGKHQ86XP1 1220 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 TEX13BQ9BXU2 312 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 IL25Q9H293 177 aa15.76■□□□□ 0.11
CLK3-218ENST00000566926 ZNF214Q9UL59 606 aaPredicted RBP15.76■□□□□ 0.11
CLK3-218ENST00000566926 NEDD4P46934 1319 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 RPTORQ8N122 1335 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 ATP2A1O14983 1001 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 KDM4AO75164 1064 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 EN2P19622 333 aaPredicted RBP15.75■□□□□ 0.11
CLK3-218ENST00000566926 GJA8P48165 433 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 OAZ1P54368 228 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 MFSD14CQ5VZR4 134 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 REPS2Q8NFH8 660 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 TRIB2Q92519 343 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 TMEM47Q9BQJ4 181 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 UNC93B1Q9H1C4 597 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 SLC38A10Q9HBR0 1119 aa15.75■□□□□ 0.11
CLK3-218ENST00000566926 HMX1Q9NP08 348 aaPredicted RBP15.75■□□□□ 0.11
CLK3-218ENST00000566926 MYH6P13533 1939 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 B4E1Z4 1266 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 ADORA2AP29274 412 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 PTH1RQ03431 593 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 KCTD2Q14681 263 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 CCDC96Q2M329 555 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 SNRNP48Q6IEG0 339 aaKnown RBP15.74■□□□□ 0.11
CLK3-218ENST00000566926 MAP4K1Q92918 833 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 USP26Q9BXU7 913 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 ANO2Q9NQ90 1003 aa15.74■□□□□ 0.11
CLK3-218ENST00000566926 SGPL1O95470 568 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 ANAPC15P60006 121 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 KCTD1Q719H9 257 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 CPXCR1Q8N123 301 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 ZSCAN10Q96SZ4 725 aaPredicted RBP15.73■□□□□ 0.11
CLK3-218ENST00000566926 MMP19Q99542 508 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 UBAC1Q9BSL1 405 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.73■□□□□ 0.112e-7■■■■□ 23.4
CLK3-218ENST00000566926 PAK6Q9NQU5 681 aaPredicted RBP15.73■□□□□ 0.11
CLK3-218ENST00000566926 ZSWIM5Q9P217 1185 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 FBXO40Q9UH90 709 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 MTMR7Q9Y216 660 aa15.73■□□□□ 0.11
CLK3-218ENST00000566926 CYP21A2P08686 494 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 MAP3K21Q5TCX8 1036 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 OLFML2BQ68BL8 750 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 RALYLQ86SE5 291 aaKnown RBP15.72■□□□□ 0.11
CLK3-218ENST00000566926 CHST13Q8NET6 341 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 U2AF1L4Q8WU68 220 aaKnown RBP15.72■□□□□ 0.11
CLK3-218ENST00000566926 ANKS1AQ92625 1134 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 ZKSCAN3Q9BRR0 538 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 KAT14Q9H8E8 782 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 PNMA2Q9UL42 364 aa15.72■□□□□ 0.11
CLK3-218ENST00000566926 TFRCP02786 760 aaKnown RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 PDHBP11177 359 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 PRKAR2AP13861 404 aaKnown RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 SLC4A3P48751 1232 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 CACNB2Q08289 660 aaPredicted RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 CCL14Q16627 93 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 TKFCQ3LXA3 575 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 GPATCH4Q5T3I0 446 aaKnown RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 BTNL9Q6UXG8 535 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 NCOA7Q8NI08 942 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 NPLOC4Q8TAT6 608 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 DDX11Q96FC9 970 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 DEFB118Q96PH6 123 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 RAVER2Q9HCJ3 691 aaKnown RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 PRR12Q9ULL5 1215 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 DIS3Q9Y2L1 958 aaKnown RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 RBM8AQ9Y5S9 174 aaKnown RBP15.71■□□□□ 0.11
CLK3-218ENST00000566926 SMCHD1A6NHR9 2005 aa15.71■□□□□ 0.11
CLK3-218ENST00000566926 TNKSO95271 1327 aa15.7■□□□□ 0.1
CLK3-218ENST00000566926 ERICH2A1L162 156 aa15.7■□□□□ 0.1
CLK3-218ENST00000566926 SNHG28P0DPA3 235 aa15.7■□□□□ 0.1
CLK3-218ENST00000566926 SART3Q15020 963 aaKnown RBP15.7■□□□□ 0.1
CLK3-218ENST00000566926 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms