RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 CHMP2AO43633 222 aa12.96□□□□□ -0.33
CDH1-210ENST00000566612 COPB1P53618 953 aaKnown RBP12.96□□□□□ -0.33
CDH1-210ENST00000566612 PRPF4BQ13523 1007 aaKnown RBP12.96□□□□□ -0.33
CDH1-210ENST00000566612 OGFOD1Q8N543 542 aa12.96□□□□□ -0.33
CDH1-210ENST00000566612 SRBD1Q8N5C6 995 aaKnown RBP12.96□□□□□ -0.33
CDH1-210ENST00000566612 OR8K1Q8NGG5 319 aa12.96□□□□□ -0.33
CDH1-210ENST00000566612 AKAP12Q02952 1782 aa12.96□□□□□ -0.33
CDH1-210ENST00000566612 NCBP1Q09161 790 aaKnown RBP12.96□□□□□ -0.33
CDH1-210ENST00000566612 CUL4BQ13620 913 aa12.96□□□□□ -0.33
CDH1-210ENST00000566612 HLTFQ14527 1009 aaKnown RBP eCLIP12.96□□□□□ -0.33
CDH1-210ENST00000566612 NSUN4Q96CB9 384 aaKnown RBP12.96□□□□□ -0.33
CDH1-210ENST00000566612 NLRC4Q9NPP4 1024 aa12.96□□□□□ -0.33
CDH1-210ENST00000566612 PP2D1A8MPX8 630 aa12.96□□□□□ -0.34
CDH1-210ENST00000566612 SF3B2Q13435 895 aaKnown RBP12.96□□□□□ -0.34
CDH1-210ENST00000566612 ILDR1Q86SU0 546 aaPredicted RBP12.96□□□□□ -0.34
CDH1-210ENST00000566612 STAG2Q8N3U4 1231 aa12.96□□□□□ -0.34
CDH1-210ENST00000566612 HINFPQ9BQA5 517 aa12.96□□□□□ -0.34
CDH1-210ENST00000566612 TEX33O43247 280 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 TRIM37O94972 964 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 RNASE9P60153 205 aaKnown RBP12.95□□□□□ -0.34
CDH1-210ENST00000566612 ODF2Q5BJF6 829 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 DCAF17Q5H9S7 520 aaPredicted RBP12.95□□□□□ -0.34
CDH1-210ENST00000566612 RBM26Q5T8P6 1007 aaKnown RBP12.95□□□□□ -0.34
CDH1-210ENST00000566612 TBCKQ8TEA7 893 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 FBXO2Q9UK22 296 aaPredicted RBP12.95□□□□□ -0.34
CDH1-210ENST00000566612 TRAPPC10P48553 1259 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 TRIM14Q14142 442 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 LINC00116Q8NCU8 138 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 GDAP1L1Q96MZ0 367 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 GOLGA6L10A6NI86 522 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 H7C1D1 291 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 CDK8P49336 464 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 GRAPQ13588 217 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 RAPGEF1Q13905 1077 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 TNIP1Q15025 636 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 NCAPH2Q6IBW4 605 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 GRAPLQ8TC17 118 aaPredicted RBP12.95□□□□□ -0.34
CDH1-210ENST00000566612 JAKMIP2Q96AA8 810 aa12.95□□□□□ -0.34
CDH1-210ENST00000566612 OSBPL5Q9H0X9 879 aaPredicted RBP12.95□□□□□ -0.34
CDH1-210ENST00000566612 TYW1BQ6NUM6 668 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 CCDC65Q8IXS2 484 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 ACRBPQ8NEB7 543 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.94□□□□□ -0.34
CDH1-210ENST00000566612 ZBTB21Q9ULJ3 1066 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 B4DLN1 442 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 FMR1Q06787 632 aaKnown RBP eCLIP12.94□□□□□ -0.34
CDH1-210ENST00000566612 KCTD1Q719H9 257 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 C2CD5Q86YS7 1000 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 SMAP1Q8IYB5 467 aaPredicted RBP12.94□□□□□ -0.34
CDH1-210ENST00000566612 TMEM47Q9BQJ4 181 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 SMIM22K7EJ46 135 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 CCZ1BP86790 482 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 CCZ1P86791 482 aaPredicted RBP12.94□□□□□ -0.34
CDH1-210ENST00000566612 CKAP4Q07065 602 aaKnown RBP12.94□□□□□ -0.34
CDH1-210ENST00000566612 TMEM132AQ24JP5 1023 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 DGKHQ86XP1 1220 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 TEKT1Q969V4 418 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 VPS18Q9P253 973 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 MCM3P25205 808 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 RRAGAQ7L523 313 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 ADGRA1Q86SQ6 560 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 BPIFA3Q9BQP9 254 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 NAA15Q9BXJ9 866 aaKnown RBP12.94□□□□□ -0.34
CDH1-210ENST00000566612 PSTPIP2Q9H939 334 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 PCDHA12Q9UN75 941 aa12.94□□□□□ -0.34
CDH1-210ENST00000566612 FGFR2P21802 821 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 MAPK8IP2Q13387 824 aaPredicted RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 LRRC41Q15345 812 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 PFKFB3Q16875 520 aaPredicted RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 TOGARAM2Q6ZUX3 1019 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 CERS3Q8IU89 383 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 SPATA31A1Q5TZJ5 1347 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 ENC1O14682 589 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 RBM43Q6ZSC3 357 aaKnown RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 ANKRD13CQ8N6S4 541 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 TUBGCP2Q9BSJ2 902 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 EPN1Q9Y6I3 576 aaPredicted RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 NFAT5O94916 1531 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 TRIM49BA6NDI0 452 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 SEC31AO94979 1220 aaKnown RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 E4F1Q66K89 784 aaPredicted RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 SLC35F6Q8N357 371 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 ZNF579Q8NAF0 562 aaKnown RBP12.93□□□□□ -0.34
CDH1-210ENST00000566612 DBNDD1Q9H9R9 158 aa12.93□□□□□ -0.34
CDH1-210ENST00000566612 PLCG1P19174 1290 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 CACNB3P54284 484 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 KRT31Q15323 416 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 SF3B3Q15393 1217 aaKnown RBP12.92□□□□□ -0.34
CDH1-210ENST00000566612 NWD1Q149M9 1564 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 COL5A2P05997 1499 aaPredicted RBP12.92□□□□□ -0.34
CDH1-210ENST00000566612 CFBP00751 764 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 PTPAQ15257 358 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 FBXO38Q6PIJ6 1188 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 C3orf67Q6ZVT6 689 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 MAEAQ7L5Y9 396 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 GTPBP4Q9BZE4 634 aaKnown RBP12.92□□□□□ -0.34
CDH1-210ENST00000566612 PLEKHA4Q9H4M7 779 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 CD209Q9NNX6 404 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 FAM13AO94988 1023 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 MAGEA1P43355 309 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms