RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 NUCB1Q02818 461 aa26.65■■□□□ 1.86
CLN3-215ENST00000565236 SNRNP48Q6IEG0 339 aaKnown RBP26.65■■□□□ 1.86
CLN3-215ENST00000565236 CPXCR1Q8N123 301 aa26.65■■□□□ 1.86
CLN3-215ENST00000565236 ISY1Q9ULR0 285 aaKnown RBP26.65■■□□□ 1.86
CLN3-215ENST00000565236 BMP3P12645 472 aa26.64■■□□□ 1.86
CLN3-215ENST00000565236 SLC4A3P48751 1232 aa26.64■■□□□ 1.86
CLN3-215ENST00000565236 NMIQ13287 307 aaPredicted RBP26.64■■□□□ 1.86
CLN3-215ENST00000565236 PRAMEF19Q5SWL8 479 aa26.64■■□□□ 1.86
CLN3-215ENST00000565236 STX8Q9UNK0 236 aa26.64■■□□□ 1.86
CLN3-215ENST00000565236 RANBP2P49792 3224 aaKnown RBP26.63■■□□□ 1.85
CLN3-215ENST00000565236 ATP2A1O14983 1001 aa26.63■■□□□ 1.85
CLN3-215ENST00000565236 SEPT4O43236 478 aa26.63■■□□□ 1.85
CLN3-215ENST00000565236 RANBP6O60518 1105 aaKnown RBP26.63■■□□□ 1.85
CLN3-215ENST00000565236 FGAP02671 866 aa26.63■■□□□ 1.85
CLN3-215ENST00000565236 PLEKHM2Q8IWE5 1019 aa26.63■■□□□ 1.85
CLN3-215ENST00000565236 ARRDC4Q8NCT1 418 aa26.63■■□□□ 1.85
CLN3-215ENST00000565236 PRO3102Q9H379 93 aa26.63■■□□□ 1.85
CLN3-215ENST00000565236 ZMYND8Q9ULU4 1186 aaPredicted RBP26.63■■□□□ 1.85
CLN3-215ENST00000565236 DIS3Q9Y2L1 958 aaKnown RBP26.63■■□□□ 1.85
CLN3-215ENST00000565236 SUPT16HQ9Y5B9 1047 aaKnown RBP26.63■■□□□ 1.85
CLN3-215ENST00000565236 ZNF792Q3KQV3 632 aa26.62■■□□□ 1.85
CLN3-215ENST00000565236 DDX11Q96FC9 970 aa26.62■■□□□ 1.85
CLN3-215ENST00000565236 SENP6Q9GZR1 1112 aaPredicted RBP26.62■■□□□ 1.85
CLN3-215ENST00000565236 OSBPL3Q9H4L5 887 aa26.62■■□□□ 1.85
CLN3-215ENST00000565236 SLC38A10Q9HBR0 1119 aa26.62■■□□□ 1.85
CLN3-215ENST00000565236 RAVER2Q9HCJ3 691 aaKnown RBP26.62■■□□□ 1.85
CLN3-215ENST00000565236 TOMM22Q9NS69 142 aa26.62■■□□□ 1.85
CLN3-215ENST00000565236 FRMPD3Q5JV73 1810 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 TMEM232C9JQI7 657 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 HSPD1P10809 573 aaKnown RBP26.61■■□□□ 1.85
CLN3-215ENST00000565236 SLC1A4P43007 532 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 ANO1Q5XXA6 986 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 TINF2Q9BSI4 451 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 IL17RBQ9NRM6 502 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 RIPK3Q9Y572 518 aa26.61■■□□□ 1.85
CLN3-215ENST00000565236 DNM1LO00429 736 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 ORC4O43929 436 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 NMT2O60551 498 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 MCCP23508 829 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 IKQ13123 557 aaPredicted RBP26.6■■□□□ 1.85
CLN3-215ENST00000565236 LRRC26Q2I0M4 334 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 ZNF589Q86UQ0 364 aaPredicted RBP26.6■■□□□ 1.85
CLN3-215ENST00000565236 CHURC1Q8WUH1 139 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 CHMP4CQ96CF2 233 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 GMCL1Q96IK5 515 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 NRBP1Q9UHY1 535 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 TACC3Q9Y6A5 838 aa26.6■■□□□ 1.85
CLN3-215ENST00000565236 FGRP09769 529 aa26.59■■□□□ 1.85
CLN3-215ENST00000565236 FDX1P10109 184 aa26.59■■□□□ 1.85
CLN3-215ENST00000565236 SYN1P17600 705 aa26.59■■□□□ 1.85
CLN3-215ENST00000565236 SDSP20132 328 aa26.59■■□□□ 1.85
CLN3-215ENST00000565236 STAT2P52630 851 aa26.59■■□□□ 1.85
CLN3-215ENST00000565236 MFAP1P55081 439 aaKnown RBP26.59■■□□□ 1.85
CLN3-215ENST00000565236 GJC2Q5T442 439 aaPredicted RBP26.59■■□□□ 1.85
CLN3-215ENST00000565236 CCDC171Q6TFL3 1326 aa26.59■■□□□ 1.85
CLN3-215ENST00000565236 DNAH12Q6ZR08 3092 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 PLXNA1Q9UIW2 1896 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 MYCNP04198 464 aaPredicted RBP26.58■■□□□ 1.85
CLN3-215ENST00000565236 OAZ1P54368 228 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 RRP12Q5JTH9 1297 aaKnown RBP26.58■■□□□ 1.85
CLN3-215ENST00000565236 FAM160B2Q86V87 743 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 STAG1Q8WVM7 1258 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 PCDH10Q9P2E7 1040 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 FBXO40Q9UH90 709 aa26.58■■□□□ 1.85
CLN3-215ENST00000565236 A0A1W2PPC1 479 aa26.57■■□□□ 1.84
CLN3-215ENST00000565236 KBTBD13C9JR72 458 aa26.57■■□□□ 1.84
CLN3-215ENST00000565236 RCSD1Q6JBY9 416 aa26.57■■□□□ 1.84
CLN3-215ENST00000565236 CNPY2Q9Y2B0 182 aa26.57■■□□□ 1.84
CLN3-215ENST00000565236 ZMYM6O95789 1325 aa26.57■■□□□ 1.84
CLN3-215ENST00000565236 ANKRD35Q8N283 1001 aa26.56■■□□□ 1.84
CLN3-215ENST00000565236 CHST13Q8NET6 341 aa26.56■■□□□ 1.84
CLN3-215ENST00000565236 GDF15Q99988 308 aa26.56■■□□□ 1.84
CLN3-215ENST00000565236 SMCHD1A6NHR9 2005 aa26.56■■□□□ 1.84
CLN3-215ENST00000565236 ATN1P54259 1190 aaPredicted RBP26.55■■□□□ 1.84
CLN3-215ENST00000565236 HAND2P61296 217 aa26.55■■□□□ 1.84
CLN3-215ENST00000565236 KCTD1Q719H9 257 aa26.55■■□□□ 1.84
CLN3-215ENST00000565236 MSL3Q8N5Y2 521 aaKnown RBP26.55■■□□□ 1.84
CLN3-215ENST00000565236 DIAPH3Q9NSV4 1193 aa26.55■■□□□ 1.84
CLN3-215ENST00000565236 MTMR7Q9Y216 660 aa26.55■■□□□ 1.84
CLN3-215ENST00000565236 DNAJC25-GNG10A0A024R161 153 aa26.54■■□□□ 1.84
CLN3-215ENST00000565236 PLA2G6O60733 806 aa26.54■■□□□ 1.84
CLN3-215ENST00000565236 RARBP10826 455 aa26.54■■□□□ 1.84
CLN3-215ENST00000565236 TAL1P17542 331 aaPredicted RBP26.54■■□□□ 1.84
CLN3-215ENST00000565236 BMP8BP34820 402 aa26.54■■□□□ 1.84
CLN3-215ENST00000565236 HOMER2Q9NSB8 354 aa26.54■■□□□ 1.84
CLN3-215ENST00000565236 HIP1O00291 1037 aa26.53■■□□□ 1.84
CLN3-215ENST00000565236 NOVP48745 357 aa26.53■■□□□ 1.84
CLN3-215ENST00000565236 CWC27Q6UX04 472 aaKnown RBP26.53■■□□□ 1.84
CLN3-215ENST00000565236 MFSD6Q6ZSS7 791 aa26.53■■□□□ 1.84
CLN3-215ENST00000565236 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.53■■□□□ 1.84
CLN3-215ENST00000565236 XPNPEP3Q9NQH7 507 aa26.53■■□□□ 1.84
CLN3-215ENST00000565236 PCP11498 1178 aaKnown RBP26.52■■□□□ 1.84
CLN3-215ENST00000565236 MAGEA10P43363 369 aaPredicted RBP26.52■■□□□ 1.84
CLN3-215ENST00000565236 LRRC41Q15345 812 aa26.52■■□□□ 1.84
CLN3-215ENST00000565236 AKNAD1Q5T1N1 836 aa26.52■■□□□ 1.84
CLN3-215ENST00000565236 MAMDC4Q6UXC1 1216 aa26.52■■□□□ 1.84
CLN3-215ENST00000565236 TCP11L1Q9NUJ3 509 aa26.52■■□□□ 1.84
CLN3-215ENST00000565236 SYNGAP1Q96PV0 1343 aa26.51■■□□□ 1.83
CLN3-215ENST00000565236 ZNF865P0CJ78 1059 aaPredicted RBP26.51■■□□□ 1.83
CLN3-215ENST00000565236 TOP1P11387 765 aaKnown RBP26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 202.8 ms