RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CCDC7Q96M83 1385 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 FOXN1O15353 648 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 RNGTTO60942 597 aaKnown RBP7.47□□□□□ -1.21
VPS35-204ENST00000563884 GSTP1P09211 210 aaKnown RBP7.47□□□□□ -1.21
VPS35-204ENST00000563884 MAPK1P28482 360 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 PLCB3Q01970 1234 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 PLCL1Q15111 1095 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 ENOX2Q16206 610 aaKnown RBP7.47□□□□□ -1.21
VPS35-204ENST00000563884 STK11IPQ8N1F8 1099 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 GLIS3Q8NEA6 775 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 BCL7CQ8WUZ0 217 aaPredicted RBP7.47□□□□□ -1.21
VPS35-204ENST00000563884 ASB16Q96NS5 453 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 FANCD2OSQ96PS1 177 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 PPP4R2Q9NY27 417 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 POGKQ9P215 609 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 GPN3Q9UHW5 284 aaPredicted RBP7.47□□□□□ -1.21
VPS35-204ENST00000563884 TIAM2Q8IVF5 1701 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 KIAA1551Q9HCM1 1747 aa7.47□□□□□ -1.21
VPS35-204ENST00000563884 ZNF862O60290 1169 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 FAM87AP0C7U9 286 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 JUNBP17275 347 aaPredicted RBP7.46□□□□□ -1.22
VPS35-204ENST00000563884 FCGRTP55899 365 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 PPP2R3AQ06190 1150 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 OGFOD2Q6N063 350 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 ZNF574Q6ZN55 896 aaPredicted RBP7.46□□□□□ -1.22
VPS35-204ENST00000563884 SMYD4Q8IYR2 804 aaPredicted RBP7.46□□□□□ -1.22
VPS35-204ENST00000563884 FLAD1Q8NFF5 587 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 KCNB2Q92953 911 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 NLRP2Q9NX02 1062 aa7.46□□□□□ -1.22
VPS35-204ENST00000563884 PPIP5K1Q6PFW1 1433 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 NSD3Q9BZ95 1437 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 PDIA4P13667 645 aaKnown RBP7.45□□□□□ -1.22
VPS35-204ENST00000563884 ITGB5P18084 799 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 FMR1Q06787 632 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS35-204ENST00000563884 TMEM132EQ6IEE7 984 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 PRAM1Q96QH2 718 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 KRT82Q9NSB4 513 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 TMEM39AQ9NV64 488 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 SLIT3O75094 1523 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 ADGRF5Q8IZF2 1346 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 UBR3Q6ZT12 1888 aa7.45□□□□□ -1.22
VPS35-204ENST00000563884 FAM208AQ9UK61 1670 aaKnown RBP7.44□□□□□ -1.22
VPS35-204ENST00000563884 HCLS1P14317 486 aaPredicted RBP7.44□□□□□ -1.22
VPS35-204ENST00000563884 BNIP3Q12983 259 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 SAFB2Q14151 953 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS35-204ENST00000563884 TTLL4Q14679 1199 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 KIF4BQ2VIQ3 1234 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 ARHGAP27Q6ZUM4 889 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 ZSCAN29Q8IWY8 852 aaPredicted RBP7.44□□□□□ -1.22
VPS35-204ENST00000563884 PLD6Q8N2A8 252 aaKnown RBP7.44□□□□□ -1.22
VPS35-204ENST00000563884 FAM181AQ8N9Y4 354 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 DISC1Q9NRI5 854 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 CCDC88AQ3V6T2 1871 aa7.44□□□□□ -1.22
VPS35-204ENST00000563884 GCP02774 474 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 FZD5Q13467 585 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 SPRED2Q7Z698 418 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 NETO1Q8TDF5 533 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 GCC1Q96CN9 775 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 MISP3Q96FF7 219 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 ACSBG1Q96GR2 724 aa7.43□□□□□ -1.22
VPS35-204ENST00000563884 SSU72Q9NP77 194 aaKnown RBP7.43□□□□□ -1.22
VPS35-204ENST00000563884 POLR3AO14802 1390 aaPredicted RBP7.43□□□□□ -1.22
VPS35-204ENST00000563884 ZBTB7CA1YPR0 619 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 LBX1P52954 281 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 ZNF792Q3KQV3 632 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 PI16Q6UXB8 463 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 BCO2Q9BYV7 579 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 PCOLCE2Q9UKZ9 415 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 AKAP2Q9Y2D5 859 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 PRR36Q9H6K5 1346 aa7.42□□□□□ -1.22
VPS35-204ENST00000563884 CPSF1Q10570 1443 aaKnown RBP7.42□□□□□ -1.22
VPS35-204ENST00000563884 C4BP0C0L5 1744 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 PNMA6FA0A0J9YX94 578 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 BIN1O00499 593 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 XRCC5P13010 732 aaKnown RBP7.41□□□□□ -1.22
VPS35-204ENST00000563884 C9orf131Q5VYM1 1079 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 SND1Q7KZF4 910 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS35-204ENST00000563884 COL23A1Q86Y22 540 aaPredicted RBP7.41□□□□□ -1.22
VPS35-204ENST00000563884 SULF2Q8IWU5 870 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 FBF1Q8TES7 1133 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 PCDHGC5Q9Y5F6 944 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 CNTNAP1P78357 1384 aa7.41□□□□□ -1.22
VPS35-204ENST00000563884 KRTAP4-8A0A0G2JLE6 195 aa7.4□□□□□ -1.22
VPS35-204ENST00000563884 LEFTY1O75610 366 aa7.4□□□□□ -1.22
VPS35-204ENST00000563884 PAPLNO95428 1278 aa7.4□□□□□ -1.22
VPS35-204ENST00000563884 MAP1SQ66K74 1059 aaPredicted RBP7.4□□□□□ -1.22
VPS35-204ENST00000563884 PDZD3Q86UT5 571 aa7.4□□□□□ -1.22
VPS35-204ENST00000563884 TOGARAM1Q9Y4F4 1720 aa7.4□□□□□ -1.23
VPS35-204ENST00000563884 LTN1O94822 1766 aa7.4□□□□□ -1.23
VPS35-204ENST00000563884 DICER1Q9UPY3 1922 aaKnown RBP7.4□□□□□ -1.23
VPS35-204ENST00000563884 THSD7BQ9C0I4 1608 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 CD8BP10966 210 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 VEGFAP15692 232 aaPredicted RBP7.39□□□□□ -1.23
VPS35-204ENST00000563884 ARNTP27540 789 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS35-204ENST00000563884 WFDC3Q8IUB2 231 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS35-204ENST00000563884 POU5F2Q8N7G0 328 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 STK35Q8TDR2 534 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 CBX8Q9HC52 389 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms