RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TNFAIP3P21580 790 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF165P49910 485 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF280AP59817 542 aaPredicted RBP6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 TMPRSS15P98073 1019 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PUM3Q15397 648 aaKnown RBP6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 LONRF2Q1L5Z9 754 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 SYDE2Q5VT97 1194 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ARMC3Q5W041 872 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 HGSNATQ68CP4 663 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 TTBK2Q6IQ55 1244 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PDE12Q6L8Q7 609 aaKnown RBP6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PKN3Q6P5Z2 889 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 RBBP8NLQ8NC74 664 aaPredicted RBP6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 JARID2Q92833 1246 aaPredicted RBP6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 LRRC4BQ9NT99 713 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PPM1HQ9ULR3 514 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 SLC45A1Q9Y2W3 748 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PCDHB5Q9Y5E4 795 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PCDHGB3Q9Y5G1 929 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 AGLP35573 1532 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ATP7AQ04656 1500 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ROBO2Q9HCK4 1378 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 KDM5CP41229 1560 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 UBAP1LF5GYI3 381 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ZRANB2O95218 330 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 BMP4P12644 408 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 TYRP1P17643 537 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 FGFR3P22607 806 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 POLD1P28340 1107 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ECE1P42892 770 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ID4P47928 161 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 PTPN21Q16825 1174 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 FNDC3BQ53EP0 1204 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 HYIQ5T013 277 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 KIAA0319Q5VV43 1072 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 XRRA1Q6P2D8 792 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 PDXDC1Q6P996 788 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 EEPD1Q7L9B9 569 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 TTC6Q86TZ1 520 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 TRIM42Q8IWZ5 723 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 CMTR1Q8N1G2 835 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 THEMISQ8N1K5 641 aaPredicted RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 GJA10Q969M2 543 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 DHRS4Q9BTZ2 278 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ZCCHC2Q9C0B9 1178 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 PUS7LQ9H0K6 701 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 GDF2Q9UK05 429 aaPredicted RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 FBXO2Q9UK22 296 aaPredicted RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 REREQ9P2R6 1566 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ABCC5O15440 1437 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 FAM221AA4D161 298 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 PMM2O15305 246 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 DHX16O60231 1041 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 PAGE1O75459 146 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 CELA2BP08218 269 aaPredicted RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 CT47B1P0C2W7 299 aaPredicted RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 BCRP11274 1271 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 TXLNAP40222 546 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 GTF2A2P52657 109 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 BIRC3Q13489 604 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 SEPT7Q16181 437 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 HIF1AQ16665 826 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ABCB5Q2M3G0 1257 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 CWF19L2Q2TBE0 894 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 SLC10A6Q3KNW5 377 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 MINDY4Q4G0A6 757 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 DTHD1Q6ZMT9 781 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 SPATS2Q86XZ4 545 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 NEDD1Q8NHV4 660 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 GATAD2BQ8WXI9 593 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ABHD17AQ96GS6 310 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ZIC5Q96T25 663 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 EIF2AK1Q9BQI3 630 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ANTXR1Q9H6X2 564 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ABCB6Q9NP58 842 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ANLNQ9NQW6 1124 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 SUCOQ9UBS9 1254 aaKnown RBP6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 ADAMTS8Q9UP79 889 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 DMTF1Q9Y222 760 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 KCNMB2Q9Y691 235 aa6.3□□□□□ -1.4
VPS35P1-201ENST00000563400 SAMD9LQ8IVG5 1584 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 ADGBQ8N7X0 1667 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 LRRIQ1Q96JM4 1722 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 MAST1Q9Y2H9 1570 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 NUP155O75694 1391 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 ENC1O14682 589 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 FIBPO43427 364 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 BNIP3LO60238 219 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 ARAFP10398 606 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 PHKG2P15735 406 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 YOD1Q5VVQ6 348 aaPredicted RBP6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 PEAR1Q5VY43 1037 aaPredicted RBP6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 PPP4R3AQ6IN85 833 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 C16orf54Q6UWD8 224 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 LYPD4Q6UWN0 246 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 EPM2AIP1Q7L775 607 aaPredicted RBP6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 MAATS1Q7Z4T9 603 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 GOLGA6L1Q8N7Z2 621 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 PI4K2BQ8TCG2 481 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 RHPN1Q8TCX5 695 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms