RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 FEM1BQ9UK73 627 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 ZNFX1Q9P2E3 1918 aaKnown RBP19.28■□□□□ 0.68
SNX1-213ENST00000561026 KBTBD13C9JR72 458 aa19.28■□□□□ 0.68
SNX1-213ENST00000561026 ZBED4O75132 1171 aa19.28■□□□□ 0.68
SNX1-213ENST00000561026 PDE1AP54750 535 aa19.28■□□□□ 0.68
SNX1-213ENST00000561026 TDHQ8IZJ6 230 aa19.28■□□□□ 0.68
SNX1-213ENST00000561026 CPXCR1Q8N123 301 aa19.28■□□□□ 0.68
SNX1-213ENST00000561026 KIFC2Q96AC6 838 aa19.28■□□□□ 0.68
SNX1-213ENST00000561026 MYCNP04198 464 aaPredicted RBP19.27■□□□□ 0.68
SNX1-213ENST00000561026 LRRC41Q15345 812 aa19.27■□□□□ 0.68
SNX1-213ENST00000561026 SLFN13Q68D06 897 aa19.27■□□□□ 0.68
SNX1-213ENST00000561026 DDX11Q96FC9 970 aa19.27■□□□□ 0.68
SNX1-213ENST00000561026 SLC38A10Q9HBR0 1119 aa19.27■□□□□ 0.68
SNX1-213ENST00000561026 CTDP1Q9Y5B0 961 aaPredicted RBP19.27■□□□□ 0.68
SNX1-213ENST00000561026 DNAJC25-GNG10A0A024R161 153 aa19.26■□□□□ 0.67
SNX1-213ENST00000561026 BMP3P12645 472 aa19.26■□□□□ 0.67
SNX1-213ENST00000561026 TAL1P17542 331 aaPredicted RBP19.26■□□□□ 0.67
SNX1-213ENST00000561026 RTP1P59025 263 aa19.26■□□□□ 0.67
SNX1-213ENST00000561026 MDM2Q00987 491 aaPredicted RBP19.26■□□□□ 0.67
SNX1-213ENST00000561026 LRIT3Q3SXY7 679 aa19.26■□□□□ 0.67
SNX1-213ENST00000561026 SLC39A5Q6ZMH5 540 aa19.26■□□□□ 0.67
SNX1-213ENST00000561026 MSL3Q8N5Y2 521 aaKnown RBP19.26■□□□□ 0.67
SNX1-213ENST00000561026 RAVER2Q9HCJ3 691 aaKnown RBP19.26■□□□□ 0.67
SNX1-213ENST00000561026 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.26■□□□□ 0.67
SNX1-213ENST00000561026 ZNF865P0CJ78 1059 aaPredicted RBP19.25■□□□□ 0.67
SNX1-213ENST00000561026 RARBP10826 455 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 ADCYAP1R1P41586 468 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 SLC4A3P48751 1232 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 CTDSPL2Q05D32 466 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 PPP4R3BQ5MIZ7 849 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 VPS53Q5VIR6 699 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 XPNPEP3Q9NQH7 507 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 INCENPQ9NQS7 918 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 HELLSQ9NRZ9 838 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 CNPY2Q9Y2B0 182 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 MYH4Q9Y623 1939 aa19.25■□□□□ 0.67
SNX1-213ENST00000561026 OAZ1P54368 228 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 AAMPQ13685 434 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 GPR153Q6NV75 609 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 MAMDC4Q6UXC1 1216 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.24■□□□□ 0.67
SNX1-213ENST00000561026 TICAM2Q86XR7 235 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 GMCL1Q96IK5 515 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 LBHD1Q9BQE6 289 aaPredicted RBP19.24■□□□□ 0.67
SNX1-213ENST00000561026 FBXO40Q9UH90 709 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 ANAPC4Q9UJX5 808 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 ATP11BQ9Y2G3 1177 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 SMCHD1A6NHR9 2005 aa19.24■□□□□ 0.67
SNX1-213ENST00000561026 TSPY2A6NKD2 308 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 TMEM232C9JQI7 657 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 FDX1P10109 184 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 AKR1A1P14550 325 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 SLC1A4P43007 532 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 SNX17Q15036 470 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 ALX1Q15699 326 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 CHST13Q8NET6 341 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 FERMT2Q96AC1 680 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 IL17RBQ9NRM6 502 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 PRKAG2Q9UGJ0 569 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 STX8Q9UNK0 236 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 TACC3Q9Y6A5 838 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 SYNGAP1Q96PV0 1343 aa19.23■□□□□ 0.67
SNX1-213ENST00000561026 SNAI1O95863 264 aaPredicted RBP19.22■□□□□ 0.67
SNX1-213ENST00000561026 PGK1P00558 417 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 MCCP23508 829 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 STAT2P52630 851 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 MCMDC2Q4G0Z9 681 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 C1orf53Q5VUE5 145 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 ZNF467Q7Z7K2 595 aaPredicted RBP19.22■□□□□ 0.67
SNX1-213ENST00000561026 RNF180Q86T96 592 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 ANKRD35Q8N283 1001 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 CHURC1Q8WUH1 139 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 STAG1Q8WVM7 1258 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 FAM227BQ96M60 508 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 YTHDC1Q96MU7 727 aaKnown RBP19.22■□□□□ 0.67
SNX1-213ENST00000561026 PHF24Q9UPV7 400 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 PLXNA1Q9UIW2 1896 aa19.22■□□□□ 0.67
SNX1-213ENST00000561026 ORC4O43929 436 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 RANBP6O60518 1105 aaKnown RBP19.21■□□□□ 0.67
SNX1-213ENST00000561026 NMT2O60551 498 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 FGRP09769 529 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 TRIM60Q495X7 471 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 FAM160B2Q86V87 743 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 LNPKQ9C0E8 428 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 ISY1Q9ULR0 285 aaKnown RBP19.21■□□□□ 0.67
SNX1-213ENST00000561026 LAMA2P24043 3122 aaKnown RBP19.21■□□□□ 0.67
SNX1-213ENST00000561026 COL6A3P12111 3177 aa19.21■□□□□ 0.67
SNX1-213ENST00000561026 A0A0D9SFI3 127 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 PLA2G6O60733 806 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 FGAP02671 866 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 NOVP48745 357 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 RCSD1Q6JBY9 416 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 SMC5Q8IY18 1101 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 LENG1Q96BZ8 264 aaPredicted RBP19.2■□□□□ 0.66
SNX1-213ENST00000561026 CHMP4CQ96CF2 233 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 RWDD1Q9H446 243 aaPredicted RBP19.2■□□□□ 0.66
SNX1-213ENST00000561026 FAM184BQ9ULE4 1060 aa19.2■□□□□ 0.66
SNX1-213ENST00000561026 IKQ13123 557 aaPredicted RBP19.19■□□□□ 0.66
SNX1-213ENST00000561026 FGD4Q96M96 766 aa19.19■□□□□ 0.66
SNX1-213ENST00000561026 HOMER2Q9NSB8 354 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms