RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 MKL1Q969V6 931 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 DDX11Q96FC9 970 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 CEP95Q96GE4 821 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 NAPBQ9H115 298 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 XPNPEP3Q9NQH7 507 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 MTMR4Q9NYA4 1195 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 ZBTB47Q9UFB7 747 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 CNPY2Q9Y2B0 182 aa13.19□□□□□ -0.3
CCDC88C-213ENST00000557455 ATP2A1O14983 1001 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 ZMYM1Q5SVZ6 1142 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 RNF180Q86T96 592 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 DEFB123Q8N688 67 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 FERMT2Q96AC1 680 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 KIFC2Q96AC6 838 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 FEM1BQ9UK73 627 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 SYNPO2Q9UMS6 1093 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 RIPK3Q9Y572 518 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 MCM3APO60318 1980 aa13.18□□□□□ -0.3
CCDC88C-213ENST00000557455 COL6A3P12111 3177 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 ZNF865P0CJ78 1059 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 AKR1A1P14550 325 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 TAL1P17542 331 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 RRP1P56182 461 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 TFAP4Q01664 338 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 PPARAQ07869 468 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 SNX17Q15036 470 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 TRIM60Q495X7 471 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 Q7L0L9 218 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 LRRC47Q8N1G4 583 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 MSL3Q8N5Y2 521 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 GMCL1P1Q8NEA9 526 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 NEDD1Q8NHV4 660 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 SLC38A10Q9HBR0 1119 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 RAVER2Q9HCJ3 691 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 PRDM5Q9NQX1 630 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 PLIN4Q96Q06 1357 aa13.17□□□□□ -0.3
CCDC88C-213ENST00000557455 PGK1P00558 417 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 BMP3P12645 472 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 ANKRD45Q5TZF3 282 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 C1orf53Q5VUE5 145 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 SLFN13Q68D06 897 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 ANKRD35Q8N283 1001 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 FBXO40Q9UH90 709 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 ISY1Q9ULR0 285 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 PHF24Q9UPV7 400 aa13.16□□□□□ -0.3
CCDC88C-213ENST00000557455 SYNGAP1Q96PV0 1343 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 DNAJC25-GNG10A0A024R161 153 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 TMEM232C9JQI7 657 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 FDX1P10109 184 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 OAZ1P54368 228 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 PPP4R3BQ5MIZ7 849 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 MAMDC4Q6UXC1 1216 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 CCDC129Q6ZRS4 1044 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 SLC17A8Q8NDX2 589 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 CHST13Q8NET6 341 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 PDLIM7Q9NR12 457 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 FAM184BQ9ULE4 1060 aa13.15□□□□□ -0.3
CCDC88C-213ENST00000557455 SALL3Q9BXA9 1300 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 TSPY2A6NKD2 308 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 SNAI1O95863 264 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 STAT2P52630 851 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 TLE2Q04725 743 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 CTDSPL2Q05D32 466 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 IKQ13123 557 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 ZNF467Q7Z7K2 595 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 CHURC1Q8WUH1 139 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 BADQ92934 168 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 LENG1Q96BZ8 264 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 EVI5LQ96CN4 794 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 CRBNQ96SW2 442 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 MTMR10Q9NXD2 777 aa13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 ZHX1Q9UKY1 873 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-213ENST00000557455 LAMA2P24043 3122 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 A0A1W2PQ45 241 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 A0A1W2PQY0 241 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 ADAMTS4O75173 837 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 MCCP23508 829 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 SLC1A4P43007 532 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 SH3RF1Q7Z6J0 888 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 FAM160B2Q86V87 743 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 STAG1Q8WVM7 1258 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 CHMP4CQ96CF2 233 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 TSEN34Q9BSV6 310 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 HOMER2Q9NSB8 354 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 STX8Q9UNK0 236 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 TACC3Q9Y6A5 838 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 SYNRGQ9UMZ2 1314 aa13.13□□□□□ -0.31
CCDC88C-213ENST00000557455 TRIM43BA6NCK2 446 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 MOXD2PA6NHM9 499 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 FOXP2O15409 715 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 RANBP6O60518 1105 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 DUSP11O75319 330 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 CLTBP09497 229 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 ACLYP53396 1101 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 PDE1AP54750 535 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 ACVR2BQ13705 512 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 VPS53Q5VIR6 699 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 NUP133Q8WUM0 1156 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms