RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 GMCL1P1Q8NEA9 526 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 CD99L2Q8TCZ2 262 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 NUP133Q8WUM0 1156 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 ATG4CQ96DT6 458 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 MYL10Q9BUA6 226 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 ZCCHC17Q9NP64 241 aaKnown RBP11.5□□□□□ -0.57
PSEN1-213ENST00000555386 SLC45A1Q9Y2W3 748 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 CTDP1Q9Y5B0 961 aaPredicted RBP11.5□□□□□ -0.57
PSEN1-213ENST00000555386 MYH6P13533 1939 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 RLFQ13129 1914 aa11.5□□□□□ -0.57
PSEN1-213ENST00000555386 SMCHD1A6NHR9 2005 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 SPDYE16A6NNV3 312 aaPredicted RBP11.49□□□□□ -0.57
PSEN1-213ENST00000555386 FKTNO75072 461 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 RXRAP19793 462 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 SP3Q02447 781 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 WDR78Q5VTH9 848 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 DHX32Q7L7V1 743 aaKnown RBP11.49□□□□□ -0.57
PSEN1-213ENST00000555386 CCDC144CPQ8IYA2 1237 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 IGDCC4Q8TDY8 1250 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 INTS4Q96HW7 963 aaKnown RBP11.49□□□□□ -0.57
PSEN1-213ENST00000555386 SLF1Q9BQI6 1058 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 UPF3BQ9BZI7 483 aaKnown RBP11.49□□□□□ -0.57
PSEN1-213ENST00000555386 CPVLQ9H3G5 476 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 LY9Q9HBG7 655 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 TXNRD2Q9NNW7 524 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 MGAMO43451 1857 aa11.49□□□□□ -0.57
PSEN1-213ENST00000555386 CCDC69A6NI79 296 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 SH2B2O14492 632 aaPredicted RBP11.48□□□□□ -0.57
PSEN1-213ENST00000555386 DHX16O60231 1041 aaKnown RBP11.48□□□□□ -0.57
PSEN1-213ENST00000555386 PDHBP11177 359 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 PSMA5P28066 241 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 NOVP48745 357 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 NEK4P51957 841 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 CUL4AQ13619 759 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 TSGA10IPQ3SY00 556 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 C17orf99Q6UX52 265 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 Q6ZUG5 572 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 CATIPQ7Z7H3 387 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 CCAR1Q8IX12 1150 aaKnown RBP11.48□□□□□ -0.57
PSEN1-213ENST00000555386 CPXCR1Q8N123 301 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 DCAF4Q8WV16 495 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 KCNB2Q92953 911 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 GMCL1Q96IK5 515 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 LARP6Q9BRS8 491 aaKnown RBP11.48□□□□□ -0.57
PSEN1-213ENST00000555386 ARHGAP39Q9C0H5 1083 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 HOXC10Q9NYD6 342 aa11.48□□□□□ -0.57
PSEN1-213ENST00000555386 BAG4O95429 457 aaKnown RBP11.47□□□□□ -0.57
PSEN1-213ENST00000555386 FMNL1O95466 1100 aaPredicted RBP11.47□□□□□ -0.57
PSEN1-213ENST00000555386 HMGB1P09429 215 aaKnown RBP11.47□□□□□ -0.57
PSEN1-213ENST00000555386 GCLCP48506 637 aaPredicted RBP11.47□□□□□ -0.57
PSEN1-213ENST00000555386 NT5C2P49902 561 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 MRE11P49959 708 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 STAT2P52630 851 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 Q3C1V9 767 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 CCDC174Q6PII3 467 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 POTEEQ6S8J3 1075 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 PIBF1Q8WXW3 757 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 ANKS1AQ92625 1134 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 TMEM87BQ96K49 555 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 UBA5Q9GZZ9 404 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 VAT1LQ9HCJ6 419 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 BTBD7Q9P203 1132 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 RBPJLQ9UBG7 517 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 FEM1BQ9UK73 627 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 PPP1R9AQ9ULJ8 1098 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 CYP46A1Q9Y6A2 500 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 ADGRA2Q96PE1 1338 aa11.47□□□□□ -0.57
PSEN1-213ENST00000555386 PARP1P09874 1014 aaKnown RBP11.46□□□□□ -0.57
PSEN1-213ENST00000555386 BCRP11274 1271 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 PRKCSHP14314 528 aaPredicted RBP11.46□□□□□ -0.57
PSEN1-213ENST00000555386 TAL1P17542 331 aaPredicted RBP11.46□□□□□ -0.57
PSEN1-213ENST00000555386 RPS6KB1P23443 525 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 PSMC4P43686 418 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 ERVK-9P63128 1117 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 ERVK-24P63145 666 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 CAP1Q01518 475 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 EXOSC10Q01780 885 aaKnown RBP11.46□□□□□ -0.57
PSEN1-213ENST00000555386 APOBRQ0VD83 1088 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 KIF22Q14807 665 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 NOL8Q76FK4 1167 aaKnown RBP11.46□□□□□ -0.57
PSEN1-213ENST00000555386 MICU3Q86XE3 530 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 ZNF654Q8IZM8 581 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 STAG2Q8N3U4 1231 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 PRPF38AQ8NAV1 312 aaKnown RBP11.46□□□□□ -0.57
PSEN1-213ENST00000555386 GPRC5AQ8NFJ5 357 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 CHURC1Q8WUH1 139 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 CFHR5Q9BXR6 569 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 SYNPO2Q9UMS6 1093 aa11.46□□□□□ -0.57
PSEN1-213ENST00000555386 ZNFX1Q9P2E3 1918 aaKnown RBP11.46□□□□□ -0.58
PSEN1-213ENST00000555386 KLF18A0A0U1RQI7 1052 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 VWA5AO00534 786 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 ZBED4O75132 1171 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 CNMDO75829 334 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 LACTBP83111 547 aaPredicted RBP11.45□□□□□ -0.58
PSEN1-213ENST00000555386 ZNF543Q08ER8 600 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 TMEM132BQ14DG7 1078 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 KLHL40Q2TBA0 621 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 SYDE2Q5VT97 1194 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 SYNE3Q6ZMZ3 975 aa11.45□□□□□ -0.58
PSEN1-213ENST00000555386 RUFY3Q7L099 469 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms