RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PBX2P40425 430 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 KCNA10Q16322 511 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 TJAP1Q5JTD0 557 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 CCSAPQ6IQ19 270 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-209ENST00000553308 AMOTL1Q8IY63 956 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 NUP133Q8WUM0 1156 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 KIF1BPQ96EK5 621 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.93□□□□□ -0.66
SYNE2-209ENST00000553308 FAM184BQ9ULE4 1060 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 RIPK3Q9Y572 518 aa10.93□□□□□ -0.66
SYNE2-209ENST00000553308 MYH7P12883 1935 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 SYNGAP1Q96PV0 1343 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 DNAJC25-GNG10A0A024R161 153 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 MOXD2PA6NHM9 499 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 GRXCR1A8MXD5 290 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 SNRNP48Q6IEG0 339 aaKnown RBP10.92□□□□□ -0.66
SYNE2-209ENST00000553308 CTR9Q6PD62 1173 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 C16orf59Q7L2K0 433 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 MSL3Q8N5Y2 521 aaKnown RBP10.92□□□□□ -0.66
SYNE2-209ENST00000553308 SLF1Q9BQI6 1058 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 TEX13BQ9BXU2 312 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 SLC4A4Q9Y6R1 1079 aa10.92□□□□□ -0.66
SYNE2-209ENST00000553308 VCANP13611 3396 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 CDH23Q9H251 3354 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 PRUNE2Q8WUY3 3088 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 DUSP11O75319 330 aaKnown RBP10.91□□□□□ -0.66
SYNE2-209ENST00000553308 C6orf222P0C671 652 aaPredicted RBP10.91□□□□□ -0.66
SYNE2-209ENST00000553308 CSF2RAP15509 400 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 CST5P28325 142 aaPredicted RBP10.91□□□□□ -0.66
SYNE2-209ENST00000553308 SLC4A3P48751 1232 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 TMEM240Q5SV17 173 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 MFSD5Q6N075 450 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 MAMDC4Q6UXC1 1216 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 SIRT2Q8IXJ6 389 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 STK11IPQ8N1F8 1099 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 PPM1EQ8WY54 764 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 DDX11Q96FC9 970 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 DDRGK1Q96HY6 314 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 FGD4Q96M96 766 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 GLT1D1Q96MS3 346 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 HAUS7Q99871 368 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 PBX4Q9BYU1 374 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 PPP1R12CQ9BZL4 782 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.91□□□□□ -0.66
SYNE2-209ENST00000553308 PUS7LQ9H0K6 701 aaKnown RBP10.91□□□□□ -0.66
SYNE2-209ENST00000553308 PRDM12Q9H4Q4 367 aa10.91□□□□□ -0.66
SYNE2-209ENST00000553308 SPTBN5Q9NRC6 3674 aaKnown RBP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 MCM3APO60318 1980 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 ELP1O95163 1332 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 MROH7Q68CQ1 1323 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 TNFRSF10AO00220 468 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 NDUFB10O96000 172 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 ASGR1P07306 291 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 ACRP10323 421 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 ATP5JP18859 108 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 RASA1P20936 1047 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 CDK7P50613 346 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 PPIGQ13427 754 aaKnown RBP eCLIP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 ACVR2BQ13705 512 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 UBE3CQ15386 1083 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 RASIP1Q5U651 963 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 CCDC129Q6ZRS4 1044 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 FAM126BQ8IXS8 530 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 CPXCR1Q8N123 301 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 VTI1AQ96AJ9 217 aa10.9□□□□□ -0.66
SYNE2-209ENST00000553308 GAS2L1Q99501 681 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 UPF3AQ9H1J1 476 aaKnown RBP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 RAVER2Q9HCJ3 691 aaKnown RBP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 ARPP21Q9UBL0 812 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-209ENST00000553308 A0A0U1RQG5 324 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-209ENST00000553308 F5H6K3 240 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 ATP2A1O14983 1001 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 COL9A1P20849 921 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 GJA9P57773 515 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 HNRNPUQ00839 825 aaKnown RBP eCLIP10.89□□□□□ -0.67
SYNE2-209ENST00000553308 KLRC3Q07444 240 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 CCDC144BQ3MJ40 725 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 ZNF365Q70YC5 407 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 ARMCX2Q7L311 632 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 ZNF467Q7Z7K2 595 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-209ENST00000553308 PRPF38AQ8NAV1 312 aaKnown RBP10.89□□□□□ -0.67
SYNE2-209ENST00000553308 PCSK9Q8NBP7 692 aaKnown RBP10.89□□□□□ -0.67
SYNE2-209ENST00000553308 NYAP2Q9P242 653 aa10.89□□□□□ -0.67
SYNE2-209ENST00000553308 MYH4Q9Y623 1939 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 LRRC37A2A6NM11 1700 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 ARVCFO00192 962 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 CTAGE5O15320 804 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 RAB11FIP3O75154 756 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 HMMRO75330 724 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 CYP2C18P33260 490 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 BEX3Q00994 111 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 ADGRE1Q14246 886 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 GNASQ5JWF2 1037 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 AKNAD1Q5T1N1 836 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 PSRC1Q6PGN9 363 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-209ENST00000553308 CCDC174Q6PII3 467 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.88□□□□□ -0.67
SYNE2-209ENST00000553308 RPAP2Q8IXW5 612 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-209ENST00000553308 ANKRD35Q8N283 1001 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms