RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 TMEM199Q8N511 208 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 SSH3Q8TE77 659 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 HERVK_113Q902F9 699 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 CLUAP1Q96AJ1 413 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 GLT1D1Q96MS3 346 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 LRFN3Q9BTN0 628 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 C1QTNF1Q9BXJ1 281 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 MSRAQ9UJ68 235 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 ZHX1Q9UKY1 873 aaPredicted RBP15.68■□□□□ 0.1
VPS29-211ENST00000553128 FAM184BQ9ULE4 1060 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 TRANK1O15050 2925 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 ELP1O95163 1332 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 GBF1Q92538 1859 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 ARVCFO00192 962 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 VWA5AO00534 786 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 C6orf222P0C671 652 aaPredicted RBP15.67■□□□□ 0.1
VPS29-211ENST00000553128 CCDC174Q6PII3 467 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 VTI1AQ96AJ9 217 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 C1orf115Q9H7X2 142 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 SLC28A3Q9HAS3 691 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 ARHGEF10LQ9HCE6 1279 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 IL23AQ9NPF7 189 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 DCP1AQ9NPI6 582 aaPredicted RBP15.67■□□□□ 0.1
VPS29-211ENST00000553128 MROH7Q68CQ1 1323 aa15.67■□□□□ 0.1
VPS29-211ENST00000553128 DUSP11O75319 330 aaKnown RBP15.66■□□□□ 0.1
VPS29-211ENST00000553128 CST5P28325 142 aaPredicted RBP15.66■□□□□ 0.1
VPS29-211ENST00000553128 ATP8B2P98198 1209 aa15.66■□□□□ 0.1
VPS29-211ENST00000553128 OTOP2Q7RTS6 562 aa15.66■□□□□ 0.1
VPS29-211ENST00000553128 LCORLQ8N3X6 602 aa15.66■□□□□ 0.1
VPS29-211ENST00000553128 PPP1R9AQ9ULJ8 1098 aa15.66■□□□□ 0.1
VPS29-211ENST00000553128 RIPK3Q9Y572 518 aa15.66■□□□□ 0.1
VPS29-211ENST00000553128 SYNGAP1Q96PV0 1343 aa15.66■□□□□ 0.1
VPS29-211ENST00000553128 CYP2D7A0A087X1C5 515 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 A0A0U1RQG5 324 aaPredicted RBP15.65■□□□□ 0.1
VPS29-211ENST00000553128 RFXAPO00287 272 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 CTAGE5O15320 804 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 CD4P01730 458 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 EEF2P13639 858 aaKnown RBP15.65■□□□□ 0.1
VPS29-211ENST00000553128 PDE6AP16499 860 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 SLFNL1Q499Z3 407 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 VWCEQ96DN2 955 aa15.65■□□□□ 0.1
VPS29-211ENST00000553128 CRNKL1Q9BZJ0 848 aaKnown RBP15.65■□□□□ 0.1
VPS29-211ENST00000553128 DNAJC25-GNG10A0A024R161 153 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 PRKAB2O43741 272 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 FGBP02675 491 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 ACVR2BQ13705 512 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 FAM83BQ5T0W9 1011 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 MAMDC4Q6UXC1 1216 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 TMEM57Q8N5G2 664 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 FRAT1Q92837 279 aaPredicted RBP15.64■□□□□ 0.09
VPS29-211ENST00000553128 KHSRPQ92945 711 aaKnown RBP eCLIP15.64■□□□□ 0.096e-11■□□□□ 11.2
VPS29-211ENST00000553128 FGD4Q96M96 766 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 UPF3AQ9H1J1 476 aaKnown RBP15.64■□□□□ 0.09
VPS29-211ENST00000553128 NOP58Q9Y2X3 529 aaKnown RBP15.64■□□□□ 0.09
VPS29-211ENST00000553128 ZNF532Q9HCE3 1301 aa15.64■□□□□ 0.09
VPS29-211ENST00000553128 TCRBV5S4A2TA0A5A2 114 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 PTGS1P23219 599 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 CCL23P55773 120 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 GJA9P57773 515 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 BEX3Q00994 111 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 SKIV2LQ15477 1246 aaKnown RBP15.63■□□□□ 0.09
VPS29-211ENST00000553128 CCDC144BQ3MJ40 725 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 GNASQ5JWF2 1037 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 SLC9C2Q5TAH2 1124 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 PPP2R2DQ66LE6 453 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 KRT40Q6A162 431 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 MSL3Q8N5Y2 521 aaKnown RBP15.63■□□□□ 0.09
VPS29-211ENST00000553128 PCSK9Q8NBP7 692 aaKnown RBP15.63■□□□□ 0.09
VPS29-211ENST00000553128 NUP88Q99567 741 aaPredicted RBP15.63■□□□□ 0.09
VPS29-211ENST00000553128 TSPYL2Q9H2G4 693 aaPredicted RBP15.63■□□□□ 0.09
VPS29-211ENST00000553128 SH2D4AQ9H788 454 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 ARMT1Q9H993 441 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 C11orf16Q9NQ32 467 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.63■□□□□ 0.09
VPS29-211ENST00000553128 SWAP70Q9UH65 585 aa15.63■□□□□ 0.09
VPS29-211ENST00000553128 ERC2O15083 957 aa15.62■□□□□ 0.09
VPS29-211ENST00000553128 RAD21O60216 631 aa15.62■□□□□ 0.09
VPS29-211ENST00000553128 CDK8P49336 464 aa15.62■□□□□ 0.09
VPS29-211ENST00000553128 SNRNP48Q6IEG0 339 aaKnown RBP15.62■□□□□ 0.09
VPS29-211ENST00000553128 DDX11Q96FC9 970 aa15.62■□□□□ 0.09
VPS29-211ENST00000553128 WNT8AQ9H1J5 351 aa15.62■□□□□ 0.09
VPS29-211ENST00000553128 HIPK3Q9H422 1215 aa15.62■□□□□ 0.09
VPS29-211ENST00000553128 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.61■□□□□ 0.09
VPS29-211ENST00000553128 EPOPA6NHQ4 379 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 TLR3O15455 904 aaKnown RBP15.61■□□□□ 0.09
VPS29-211ENST00000553128 SLC4A3P48751 1232 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 TMED8Q6PL24 325 aaPredicted RBP15.61■□□□□ 0.09
VPS29-211ENST00000553128 SLC43A3Q8NBI5 491 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 KATNBL1Q9H079 304 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 CERS4Q9HA82 394 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 HCN4Q9Y3Q4 1203 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 ARIH1Q9Y4X5 557 aaPredicted RBP15.61■□□□□ 0.09
VPS29-211ENST00000553128 MTCH2Q9Y6C9 303 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 ASTN1O14525 1302 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 GRIN2DO15399 1336 aa15.61■□□□□ 0.09
VPS29-211ENST00000553128 FAM86C2PA6NEL3 165 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 CHGBP05060 677 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 COPB2P35606 906 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 CXCL17Q6UXB2 119 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 AACSQ86V21 672 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms