RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SH3RF3Q8TEJ3 882 aaPredicted RBP18.15■□□□□ 0.5
CUX1-213ENST00000549414 SHTN1A0MZ66 631 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 MAGEA1P43355 309 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 TERF1P54274 439 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 CYP4A11Q02928 519 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 STAG1Q8WVM7 1258 aa18.15■□□□□ 0.5
CUX1-213ENST00000549414 ICA1Q05084 483 aa18.14■□□□□ 0.5
CUX1-213ENST00000549414 FAM212AQ96EL1 285 aa18.14■□□□□ 0.5
CUX1-213ENST00000549414 VPS18Q9P253 973 aa18.14■□□□□ 0.5
CUX1-213ENST00000549414 ATF5Q9Y2D1 282 aaPredicted RBP18.14■□□□□ 0.5
CUX1-213ENST00000549414 ANKRD62A6NC57 917 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 PPEF1O14829 653 aaPredicted RBP18.14■□□□□ 0.49
CUX1-213ENST00000549414 CCDC172P0C7W6 258 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 PPP1R2P41236 205 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 TPH2Q8IWU9 490 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 RDH13Q8NBN7 331 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 PCDHA1Q9Y5I3 950 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 ITSN1Q15811 1721 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 PXDNLA1KZ92 1463 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 PDE6BP35913 854 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 KIAA0753Q2KHM9 967 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 TIGD1Q96MW7 591 aa18.14■□□□□ 0.49
CUX1-213ENST00000549414 SLFN14P0C7P3 912 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 CASP14P31944 242 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 GUCY1A2P33402 732 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 SLFN13Q68D06 897 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 NIM1KQ8IY84 436 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 OR8K1Q8NGG5 319 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 GDAP1L1Q96MZ0 367 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 NAP1L4Q99733 375 aaKnown RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 PLEKHA4Q9H4M7 779 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 SALL3Q9BXA9 1300 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 CLRN2A0PK11 232 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 PRPF3O43395 683 aaKnown RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 GCNT3O95395 438 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 HARSP12081 509 aaKnown RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 CACNB3P54284 484 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 GRAPQ13588 217 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 GRAPLQ8TC17 118 aaPredicted RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 NARFQ9UHQ1 456 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 PCDHA4Q9UN74 947 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 UBN2Q6ZU65 1347 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 EPB41P11171 864 aaKnown RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 EAPPQ56P03 285 aaPredicted RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 GPBP1Q86WP2 473 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 FMR1NBQ8N0W7 255 aaPredicted RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 NLGN1Q8N2Q7 840 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 SENP2Q9HC62 589 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 THRAP3Q9Y2W1 955 aaKnown RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 PXDNQ92626 1479 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 CCDC169A6NNP5 214 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 DDIT3P35638 169 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 MYCT1Q8N699 235 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 TBCKQ8TEA7 893 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 ARHGEF1Q92888 912 aaKnown RBP18.13■□□□□ 0.49
CUX1-213ENST00000549414 PCDHB13Q9Y5F0 798 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 UTYO14607 1347 aa18.13■□□□□ 0.49
CUX1-213ENST00000549414 ARHGEF35A5YM69 484 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 LONP1P36776 959 aaKnown RBP18.12■□□□□ 0.49
CUX1-213ENST00000549414 FAM84BQ96KN1 310 aaPredicted RBP18.12■□□□□ 0.49
CUX1-213ENST00000549414 GSDMAQ96QA5 445 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 OGFRQ9NZT2 677 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 SERPINB13Q9UIV8 391 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 SRPRBQ9Y5M8 271 aaKnown RBP18.12■□□□□ 0.49
CUX1-213ENST00000549414 GDF11O95390 407 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 CTNNA2P26232 953 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 MRPL44Q9H9J2 332 aaKnown RBP18.12■□□□□ 0.49
CUX1-213ENST00000549414 DCP1AQ9NPI6 582 aaPredicted RBP18.12■□□□□ 0.49
CUX1-213ENST00000549414 TMEM232C9JQI7 657 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 HSF2BPO75031 334 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 PPARDQ03181 441 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 ARHGAP27Q6ZUM4 889 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 PDLIM2Q96JY6 352 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 SH2D4AQ9H788 454 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.12■□□□□ 0.498e-7■■■■■ 65.6
CUX1-213ENST00000549414 SELENOOQ9BVL4 669 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 FRMD4BQ9Y2L6 1034 aa18.12■□□□□ 0.49
CUX1-213ENST00000549414 RFX7Q2KHR2 1363 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 IKBKBO14920 756 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 BBOX1O75936 387 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 CACNB1Q02641 598 aaPredicted RBP18.11■□□□□ 0.49
CUX1-213ENST00000549414 PTPROQ16827 1216 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 HINFPQ9BQA5 517 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 GLT8D2Q9H1C3 349 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 DDX25Q9UHL0 483 aaKnown RBP18.11■□□□□ 0.49
CUX1-213ENST00000549414 CSF1RP07333 972 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 TMTC3Q6ZXV5 915 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 ANKRD13CQ8N6S4 541 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 PPP1R13BQ96KQ4 1090 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 BRIP1Q9BX63 1249 aa18.11■□□□□ 0.49
CUX1-213ENST00000549414 FOXN1O15353 648 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 CDK8P49336 464 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 COPB1P53618 953 aaKnown RBP18.1■□□□□ 0.49
CUX1-213ENST00000549414 UBXN2AP68543 259 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 LRRC41Q15345 812 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 MARCH10Q8NA82 808 aaPredicted RBP18.1■□□□□ 0.49
CUX1-213ENST00000549414 SECISBP2LQ93073 1101 aaKnown RBP18.1■□□□□ 0.49
CUX1-213ENST00000549414 MEGF6O75095 1541 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 CAPN2P17655 700 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 CCDC144BQ3MJ40 725 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms