RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KCTD1Q719H9 257 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 RDH13Q8NBN7 331 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 IGDCC4Q8TDY8 1250 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 DPF2Q92785 391 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 DCP1AQ9NPI6 582 aaPredicted RBP17.48■□□□□ 0.39
CUX1-211ENST00000546411 TRIM37O94972 964 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 SEC31AO94979 1220 aaKnown RBP17.48■□□□□ 0.39
CUX1-211ENST00000546411 SERPINB2P05120 415 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 CYP4A11Q02928 519 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 STXBP4Q6ZWJ1 553 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 BICD1Q96G01 975 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 XDHP47989 1333 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 AP5Z1O43299 807 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 TRIM14Q14142 442 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 VSTM4Q8IW00 320 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 RGS22Q8NE09 1264 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 TBCKQ8TEA7 893 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.48■□□□□ 0.39
CUX1-211ENST00000546411 SARM1Q6SZW1 724 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 PSTPIP2Q9H939 334 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 HOMER2Q9NSB8 354 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 SPTLC3Q9NUV7 552 aa17.48■□□□□ 0.39
CUX1-211ENST00000546411 KDM6AO15550 1401 aaPredicted RBP17.48■□□□□ 0.39
CUX1-211ENST00000546411 SHTN1A0MZ66 631 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 PRR16Q569H4 304 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 ENOX1Q8TC92 643 aaKnown RBP17.47■□□□□ 0.39
CUX1-211ENST00000546411 TEKT1Q969V4 418 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 LZTS2Q9BRK4 669 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 RFX7Q2KHR2 1363 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 PP2D1A8MPX8 630 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 ERCC5P28715 1186 aaPredicted RBP17.47■□□□□ 0.39
CUX1-211ENST00000546411 TMTC3Q6ZXV5 915 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 DBNDD1Q9H9R9 158 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 PCDHA4Q9UN74 947 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 HPS5Q9UPZ3 1129 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 CETN3O15182 167 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 CACNB3P54284 484 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 CCDC174Q6PII3 467 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 HDAC9Q9UKV0 1011 aa17.47■□□□□ 0.39
CUX1-211ENST00000546411 GSTTP1A0A1W2PQM5 241 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 SLC35F6Q8N357 371 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 EPN1Q9Y6I3 576 aaPredicted RBP17.46■□□□□ 0.39
CUX1-211ENST00000546411 KRT13P13646 458 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 LONP1P36776 959 aaKnown RBP17.46■□□□□ 0.39
CUX1-211ENST00000546411 GRIN1Q05586 938 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 CUL4BQ13620 913 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 SGMS1Q86VZ5 419 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 SMAP1Q8IYB5 467 aaPredicted RBP17.46■□□□□ 0.39
CUX1-211ENST00000546411 SECISBP2LQ93073 1101 aaKnown RBP17.46■□□□□ 0.39
CUX1-211ENST00000546411 IFIH1Q9BYX4 1025 aaKnown RBP17.46■□□□□ 0.39
CUX1-211ENST00000546411 PCDHB13Q9Y5F0 798 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 REREQ9P2R6 1566 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 H7C1D1 291 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 ATP2B4P23634 1241 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 UTP14CQ5TAP6 766 aaKnown RBP17.46■□□□□ 0.39
CUX1-211ENST00000546411 TUBGCP2Q9BSJ2 902 aa17.46■□□□□ 0.39
CUX1-211ENST00000546411 COL15A1P39059 1388 aa17.46■□□□□ 0.38
CUX1-211ENST00000546411 METTL16Q86W50 562 aaKnown RBP17.45■□□□□ 0.38
CUX1-211ENST00000546411 GTPBP4Q9BZE4 634 aaKnown RBP17.45■□□□□ 0.38
CUX1-211ENST00000546411 APBA3O96018 575 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 RNF187Q5TA31 235 aaPredicted RBP17.45■□□□□ 0.38
CUX1-211ENST00000546411 HDXQ7Z353 690 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 TEX33O43247 280 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 ZEB2O60315 1214 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 HSF2BPO75031 334 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 KCNB2Q92953 911 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 EPC1Q9H2F5 836 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 PCDHA1Q9Y5I3 950 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 TRIM49BA6NDI0 452 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 FAM196BA6NMK8 535 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 NCBP1Q09161 790 aaKnown RBP17.45■□□□□ 0.38
CUX1-211ENST00000546411 CLEC4GQ6UXB4 293 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 TBC1D5Q92609 795 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 LEMD3Q9Y2U8 911 aa17.45■□□□□ 0.38
CUX1-211ENST00000546411 SEMA3EO15041 775 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 ECM2O94769 699 aaPredicted RBP17.44■□□□□ 0.38
CUX1-211ENST00000546411 PCP11498 1178 aaKnown RBP17.44■□□□□ 0.38
CUX1-211ENST00000546411 ITPK1Q13572 414 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 GPBP1Q86WP2 473 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 ZMYND10O75800 440 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 OAS2P29728 719 aaKnown RBP17.44■□□□□ 0.38
CUX1-211ENST00000546411 UBE2SQ16763 222 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 TPH2Q8IWU9 490 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 ZNF34Q8IZ26 560 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 DYDC1Q8WWB3 177 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 KIFC2Q96AC6 838 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 DNM3Q9UQ16 869 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 GCNT3O95395 438 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 GJC1P36383 396 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 ALX1Q15699 326 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 ARMCX5Q6P1M9 558 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 STAG2Q8N3U4 1231 aa17.44■□□□□ 0.38
CUX1-211ENST00000546411 SMIM23A6NLE4 172 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 BUB1O43683 1085 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 DNM2P50570 870 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 CYP27A1Q02318 531 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 MARCH10Q8NA82 808 aaPredicted RBP17.43■□□□□ 0.38
CUX1-211ENST00000546411 CNOT6LQ96LI5 555 aaKnown RBP17.43■□□□□ 0.38
CUX1-211ENST00000546411 BRIP1Q9BX63 1249 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 PLA2G12BQ9BX93 195 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms