RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SYNGAP1Q96PV0 1343 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 TCF20Q9UGU0 1960 aaKnown RBP15.48■□□□□ 0.07
USP28-212ENST00000544750 DNAJC25-GNG10A0A024R161 153 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 CYP2D7A0A087X1C5 515 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 MYADML2A6NDP7 307 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 GOLIM4O00461 696 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 COL9A1P20849 921 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 COPB2P35606 906 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 PBX2P40425 430 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 IRX5P78411 483 aaPredicted RBP15.48■□□□□ 0.07
USP28-212ENST00000544750 KCNA10Q16322 511 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 SLFNL1Q499Z3 407 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 SAMD1Q6SPF0 538 aaPredicted RBP15.48■□□□□ 0.07
USP28-212ENST00000544750 ITPRIPQ8IWB1 547 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 NUP133Q8WUM0 1156 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.48■□□□□ 0.07
USP28-212ENST00000544750 KANSL2Q9H9L4 492 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 CNPY2Q9Y2B0 182 aa15.48■□□□□ 0.07
USP28-212ENST00000544750 BDP1A6H8Y1 2624 aa15.47■□□□□ 0.07
USP28-212ENST00000544750 ELP1O95163 1332 aa15.47■□□□□ 0.07
USP28-212ENST00000544750 ADCY6O43306 1168 aa15.47■□□□□ 0.07
USP28-212ENST00000544750 DUSP11O75319 330 aaKnown RBP15.47■□□□□ 0.07
USP28-212ENST00000544750 ADD2P35612 726 aa15.47■□□□□ 0.07
USP28-212ENST00000544750 AKNAD1Q5T1N1 836 aa15.47■□□□□ 0.07
USP28-212ENST00000544750 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP28-212ENST00000544750 FAM184BQ9ULE4 1060 aa15.47■□□□□ 0.07
USP28-212ENST00000544750 GRXCR1A8MXD5 290 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 USP17L12C9JPN9 530 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 USP17L21D6R901 530 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 MBD4O95243 580 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 PPIGQ13427 754 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP28-212ENST00000544750 FAM83BQ5T0W9 1011 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 FTSJ3Q8IY81 847 aaKnown RBP15.46■□□□□ 0.07
USP28-212ENST00000544750 ATXN2LQ8WWM7 1075 aaKnown RBP15.46■□□□□ 0.07
USP28-212ENST00000544750 FGD4Q96M96 766 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 DNAJC2Q99543 621 aaKnown RBP15.46■□□□□ 0.07
USP28-212ENST00000544750 UPF3AQ9H1J1 476 aaKnown RBP15.46■□□□□ 0.07
USP28-212ENST00000544750 RIPK3Q9Y572 518 aa15.46■□□□□ 0.07
USP28-212ENST00000544750 MROH7Q68CQ1 1323 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 ATP2A1O14983 1001 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 CHGBP05060 677 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 ADGRE1Q14246 886 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 ZNF467Q7Z7K2 595 aaPredicted RBP15.45■□□□□ 0.06
USP28-212ENST00000544750 GAS2L1Q99501 681 aaPredicted RBP15.45■□□□□ 0.06
USP28-212ENST00000544750 TEX13BQ9BXU2 312 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 PRDM12Q9H4Q4 367 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 GOPCQ9HD26 462 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 LRRC37A2A6NM11 1700 aa15.45■□□□□ 0.06
USP28-212ENST00000544750 CTAGE5O15320 804 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 ASGR1P07306 291 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 CSF2RAP15509 400 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 GJA9P57773 515 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 NKX3-2P78367 333 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 HSP90AB4PQ58FF6 505 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 ZNF365Q70YC5 407 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 FAM126BQ8IXS8 530 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 GLT1D1Q96MS3 346 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 ASB2Q96Q27 587 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 SLF1Q9BQI6 1058 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 RAPGEFL1Q9UHV5 662 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 ZHX1Q9UKY1 873 aaPredicted RBP15.44■□□□□ 0.06
USP28-212ENST00000544750 TRANK1O15050 2925 aa15.44■□□□□ 0.06
USP28-212ENST00000544750 LCTP09848 1927 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 ARVCFO00192 962 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 CD4P01730 458 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 ACRP10323 421 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 ACVR2BQ13705 512 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 SNRNP48Q6IEG0 339 aaKnown RBP15.43■□□□□ 0.06
USP28-212ENST00000544750 CTR9Q6PD62 1173 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 PSRC1Q6PGN9 363 aaPredicted RBP15.43■□□□□ 0.06
USP28-212ENST00000544750 CLASRPQ8N2M8 674 aaKnown RBP15.43■□□□□ 0.06
USP28-212ENST00000544750 PCSK9Q8NBP7 692 aaKnown RBP15.43■□□□□ 0.06
USP28-212ENST00000544750 KIF1BPQ96EK5 621 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 NUP88Q99567 741 aaPredicted RBP15.43■□□□□ 0.06
USP28-212ENST00000544750 KATNBL1Q9H079 304 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 PAG1Q9NWQ8 432 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.43■□□□□ 0.06
USP28-212ENST00000544750 THEGQ9P2T0 379 aa15.43■□□□□ 0.06
USP28-212ENST00000544750 A0A0U1RQG5 324 aaPredicted RBP15.42■□□□□ 0.06
USP28-212ENST00000544750 C6orf222P0C671 652 aaPredicted RBP15.42■□□□□ 0.06
USP28-212ENST00000544750 UBE3CQ15386 1083 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 CCDC144BQ3MJ40 725 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 CCDC174Q6PII3 467 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 TMEM199Q8N511 208 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 SLC43A3Q8NBI5 491 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 PPM1EQ8WY54 764 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 HERVK_113Q902F9 699 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 ABHD16BQ9H3Z7 469 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 CXXC1Q9P0U4 656 aaPredicted RBP15.42■□□□□ 0.06
USP28-212ENST00000544750 NYAP2Q9P242 653 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 XIRP2A4UGR9 3374 aa15.42■□□□□ 0.06
USP28-212ENST00000544750 ATP5JP18859 108 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 RASA1P20936 1047 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 CCDC129Q6ZRS4 1044 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 PRPF38AQ8NAV1 312 aaKnown RBP15.41■□□□□ 0.06
USP28-212ENST00000544750 ADAMTS19Q8TE59 1207 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 DDX11Q96FC9 970 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 PPP1R12CQ9BZL4 782 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 BOLA2Q9H3K6 86 aa15.41■□□□□ 0.06
USP28-212ENST00000544750 IL23AQ9NPF7 189 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms