RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 DACH1Q9UI36 760 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 NFIAQ12857 509 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 KIAA0825Q8IV33 1275 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 IQUBQ8NA54 791 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 TEKT1Q969V4 418 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 PRIMPOLQ96LW4 560 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 TMEM60Q9H2L4 133 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 TRMT1Q9NXH9 659 aaKnown RBP18.54■□□□□ 0.56
COL4A1-204ENST00000543140 SEC63Q9UGP8 760 aaKnown RBP18.54■□□□□ 0.56
COL4A1-204ENST00000543140 SERPINB13Q9UIV8 391 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 CDK11BP21127 795 aaKnown RBP18.54■□□□□ 0.56
COL4A1-204ENST00000543140 CACNB3P54284 484 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 DPYDQ12882 1025 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 E2F4Q16254 413 aa18.54■□□□□ 0.56
COL4A1-204ENST00000543140 APOBEC3HQ6NTF7 200 aaKnown RBP18.54■□□□□ 0.56
COL4A1-204ENST00000543140 SMCO2A6NFE2 343 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 PDHBP11177 359 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 CD44P16070 742 aaKnown RBP18.53■□□□□ 0.56
COL4A1-204ENST00000543140 SFPQP23246 707 aaKnown RBP eCLIP18.53■□□□□ 0.56
COL4A1-204ENST00000543140 CHRNA5P30532 468 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 RBM10P98175 930 aaKnown RBP18.53■□□□□ 0.56
COL4A1-204ENST00000543140 ARL6IP4Q66PJ3 421 aaKnown RBP18.53■□□□□ 0.56
COL4A1-204ENST00000543140 ZFPM1Q8IX07 1006 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 DAGLBQ8NCG7 672 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 MYRIPQ8NFW9 859 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 SAMSN1Q9NSI8 373 aaKnown RBP18.53■□□□□ 0.56
COL4A1-204ENST00000543140 PP2D1A8MPX8 630 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 CBFA2T2O43439 604 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 STX17P56962 302 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 GALNT17Q6IS24 598 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 ENOX1Q8TC92 643 aaKnown RBP18.53■□□□□ 0.56
COL4A1-204ENST00000543140 TSC1Q92574 1164 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 ZMYND12Q9H0C1 365 aa18.53■□□□□ 0.56
COL4A1-204ENST00000543140 TNNT1P13805 278 aa18.52■□□□□ 0.56
COL4A1-204ENST00000543140 ATP2B2Q01814 1243 aa18.52■□□□□ 0.56
COL4A1-204ENST00000543140 TCP10Q12799 353 aa18.52■□□□□ 0.56
COL4A1-204ENST00000543140 KARSQ15046 597 aaKnown RBP18.52■□□□□ 0.56
COL4A1-204ENST00000543140 MTRQ99707 1265 aa18.52■□□□□ 0.56
COL4A1-204ENST00000543140 GPCPD1Q9NPB8 672 aa18.52■□□□□ 0.56
COL4A1-204ENST00000543140 INTS13Q9NVM9 706 aa18.52■□□□□ 0.56
COL4A1-204ENST00000543140 H0YIN7 160 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 MPHOSPH10O00566 681 aaKnown RBP18.52■□□□□ 0.55
COL4A1-204ENST00000543140 CRKP46108 304 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 NOVP48745 357 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 GOLGA8FQ08AF8 430 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 GOLGA8DPQ0D2H9 430 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 PDXDC2PQ6P474 469 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 DTHD1Q6ZMT9 781 aa18.52■□□□□ 0.55
COL4A1-204ENST00000543140 SLX4Q8IY92 1834 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 QSER1Q2KHR3 1735 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 SHMT1P34896 483 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 LONP1P36776 959 aaKnown RBP18.51■□□□□ 0.55
COL4A1-204ENST00000543140 RBM5P52756 815 aaKnown RBP eCLIP18.51■□□□□ 0.55
COL4A1-204ENST00000543140 HHIPL2Q6UWX4 724 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 CCDC150Q8NCX0 1101 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 PLIN2Q99541 437 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 COBLO75128 1261 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 ZNF18P17022 549 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 CUL4BQ13620 913 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 LETM2Q2VYF4 491 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 SOGA3Q5TF21 947 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 RASSF8Q8NHQ8 419 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 GSDMAQ96QA5 445 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 C6orf50Q9HD87 102 aa18.51■□□□□ 0.55
COL4A1-204ENST00000543140 BIN2Q9UBW5 565 aaPredicted RBP18.51■□□□□ 0.55
COL4A1-204ENST00000543140 FAM196BA6NMK8 535 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 PODNQ7Z5L7 613 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 VSTM4Q8IW00 320 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 CCDC12Q8WUD4 166 aaPredicted RBP18.5■□□□□ 0.55
COL4A1-204ENST00000543140 SCN9AQ15858 1988 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 RXRBP28702 533 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 ERCC5P28715 1186 aaPredicted RBP18.5■□□□□ 0.55
COL4A1-204ENST00000543140 TXLNAP40222 546 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 STAT6P42226 847 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 JAKMIP3Q5VZ66 844 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 ZNF592Q92610 1267 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 COA7Q96BR5 231 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 TMEM260Q9NX78 707 aa18.5■□□□□ 0.55
COL4A1-204ENST00000543140 RIOK3O14730 519 aaKnown RBP18.49■□□□□ 0.55
COL4A1-204ENST00000543140 MYO1BO43795 1136 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 CCNT1O60563 726 aaKnown RBP18.49■□□□□ 0.55
COL4A1-204ENST00000543140 TTLL1O95922 423 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 GNA11P29992 359 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 CCAR2Q8N163 923 aaKnown RBP18.49■□□□□ 0.55
COL4A1-204ENST00000543140 RIOX1Q9H6W3 641 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 PLIN4Q96Q06 1357 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 IGKV6D-41A0A0C4DH26 115 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 DYNC1I1O14576 645 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 ECE2O60344 883 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 HLA-DOAP06340 250 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 NONOQ15233 471 aaKnown RBP eCLIP18.49■□□□□ 0.55
COL4A1-204ENST00000543140 UBE2Q2Q8WVN8 375 aa18.49■□□□□ 0.55
COL4A1-204ENST00000543140 SYNRGQ9UMZ2 1314 aa18.48■□□□□ 0.55
COL4A1-204ENST00000543140 PPP1R3GB7ZBB8 358 aa18.48■□□□□ 0.55
COL4A1-204ENST00000543140 RAD21O60216 631 aa18.48■□□□□ 0.55
COL4A1-204ENST00000543140 SHROOM1Q2M3G4 852 aaPredicted RBP18.48■□□□□ 0.55
COL4A1-204ENST00000543140 KRT25Q7Z3Z0 450 aa18.48■□□□□ 0.55
COL4A1-204ENST00000543140 SWAP70Q9UH65 585 aa18.48■□□□□ 0.55
COL4A1-204ENST00000543140 SMARCA1P28370 1054 aa18.48■□□□□ 0.55
COL4A1-204ENST00000543140 TTBK2Q6IQ55 1244 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms