RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 C1orf53Q5VUE5 145 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 SNRNP48Q6IEG0 339 aaKnown RBP18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 AMOTL1Q8IY63 956 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 SLF1Q9BQI6 1058 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 RCAN3Q9UKA8 241 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 MUC3AQ02505 3323 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 SYNRGQ9UMZ2 1314 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 MINDY4BA8MYZ0 360 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 F5H6K3 240 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 KLRC3Q07444 240 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 ZNF697Q5TEC3 545 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 KBTBD3Q8NAB2 608 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 CDX2Q99626 313 aaPredicted RBP18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 ECHDC1Q9NTX5 307 aa18.54■□□□□ 0.56
CLSTN3-213ENST00000541953 DNAJC25-GNG10A0A024R161 153 aa18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 LRRC37A2A6NM11 1700 aa18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 PQBP1O60828 265 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 LRRC47Q8N1G4 583 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 DDRGK1Q96HY6 314 aa18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 SEC62Q99442 399 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 NYAP2Q9P242 653 aa18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 NRBP1Q9UHY1 535 aa18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 DIS3Q9Y2L1 958 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-213ENST00000541953 GPAA1O43292 621 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 CLTBP09497 229 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 AKR1A1P14550 325 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 SLC4A3P48751 1232 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 ZSCAN25Q6NSZ9 544 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 RASGRP2Q7LDG7 609 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 CPXCR1Q8N123 301 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 MYLIPQ8WY64 445 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 APPBP2Q92624 585 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 CEP95Q96GE4 821 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 TEX13BQ9BXU2 312 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 SEMA6BQ9H3T3 888 aa18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 RAVER2Q9HCJ3 691 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-213ENST00000541953 FAAP100Q0VG06 881 aa18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 CCSAPQ6IQ19 270 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 RNF180Q86T96 592 aa18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 KLHDC9Q8NEP7 349 aa18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 OTUD7AQ8TE49 926 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 CHMP4CQ96CF2 233 aa18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 CLIP2Q9UDT6 1046 aa18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 ZHX1Q9UKY1 873 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 DDX49Q9Y6V7 483 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-213ENST00000541953 KIAA0355O15063 1070 aa18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 RNF113AO15541 343 aaKnown RBP18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 PTGS1P23219 599 aa18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 ACLYP53396 1101 aa18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 KIFC2Q96AC6 838 aa18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 MKNK2Q9HBH9 465 aa18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 LCTP09848 1927 aa18.5■□□□□ 0.55
CLSTN3-213ENST00000541953 GIMAP6Q6P9H5 292 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 MAMDC4Q6UXC1 1216 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 DCTPP1Q9H773 170 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 SLC38A10Q9HBR0 1119 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 MTMR4Q9NYA4 1195 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 CNPY2Q9Y2B0 182 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 TACC3Q9Y6A5 838 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 CHD7Q9P2D1 2997 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 REV3LO60673 3130 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 SYNGAP1Q96PV0 1343 aa18.49■□□□□ 0.55
CLSTN3-213ENST00000541953 FOXP2O15409 715 aa18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 COPB2P35606 906 aa18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 SMAD3P84022 425 aaKnown RBP18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 KCNA10Q16322 511 aa18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 PRPF38AQ8NAV1 312 aaKnown RBP18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 RNPC3Q96LT9 517 aaKnown RBP18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 KATNBL1Q9H079 304 aa18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.48■□□□□ 0.55
CLSTN3-213ENST00000541953 PLIN4Q96Q06 1357 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 ATP2A1O14983 1001 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 CTAGE5O15320 804 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 RAG1P15918 1043 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 TDO2P48775 406 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 CNTN2Q02246 1040 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 ANKRD33Q7Z3H0 272 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 IFNL3Q8IZI9 196 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 MAFAQ8NHW3 353 aaPredicted RBP18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 PI4K2BQ8TCG2 481 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 MKL1Q969V6 931 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 DDX11Q96FC9 970 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 STARD7Q9NQZ5 370 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 HOMER2Q9NSB8 354 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 TMEM39AQ9NV64 488 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 TBX21Q9UL17 535 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 ASTN1O14525 1302 aa18.47■□□□□ 0.55
CLSTN3-213ENST00000541953 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 ACVR2BQ13705 512 aa18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 CCDC144BQ3MJ40 725 aa18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 TSEN34Q9BSV6 310 aaKnown RBP18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 INCENPQ9NQS7 918 aa18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 FAM184BQ9ULE4 1060 aa18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 ZNF536O15090 1300 aa18.46■□□□□ 0.55
CLSTN3-213ENST00000541953 DUSP11O75319 330 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 APPP05067 770 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 SNAP25P60880 206 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 FPGSQ05932 587 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms