RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 ADAMTS4O75173 837 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 DUSP11O75319 330 aaKnown RBP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 TIMP1P01033 207 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 ATP5JP18859 108 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 DNAJB2P25686 324 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 HNRNPUQ00839 825 aaKnown RBP eCLIP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 FAAP100Q0VG06 881 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 SNRNP48Q6IEG0 339 aaKnown RBP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 ZNF467Q7Z7K2 595 aaPredicted RBP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 PRPF38AQ8NAV1 312 aaKnown RBP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 GAS2L1Q99501 681 aaPredicted RBP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 MKNK2Q9HBH9 465 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 PRDM6Q9NQX0 595 aa14.7□□□□□ -0.06
SNHG1-216ENST00000541416 ZHX1Q9UKY1 873 aaPredicted RBP14.7□□□□□ -0.06
SNHG1-216ENST00000541416 ZBED9Q6R2W3 1325 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 SYNRGQ9UMZ2 1314 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 ZBED4O75132 1171 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 TAL1P17542 331 aaPredicted RBP14.69□□□□□ -0.06
SNHG1-216ENST00000541416 ITGB8P26012 769 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 PPIGQ13427 754 aaKnown RBP eCLIP14.69□□□□□ -0.06
SNHG1-216ENST00000541416 TJAP1Q5JTD0 557 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 MAMDC4Q6UXC1 1216 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 PANK1Q8TE04 598 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 VTI1AQ96AJ9 217 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 TIFAQ96CG3 184 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 HAUS7Q99871 368 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 ZNF287Q9HBT7 754 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 FBXO40Q9UH90 709 aa14.69□□□□□ -0.06
SNHG1-216ENST00000541416 CYP2D7A0A087X1C5 515 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 TLR3O15455 904 aaKnown RBP14.68□□□□□ -0.06
SNHG1-216ENST00000541416 C6orf222P0C671 652 aaPredicted RBP14.68□□□□□ -0.06
SNHG1-216ENST00000541416 EPHB4P54760 987 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 KCNA10Q16322 511 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 MFSD5Q6N075 450 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 CTR9Q6PD62 1173 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 CCDC129Q6ZRS4 1044 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 TMEM199Q8N511 208 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 KLHDC9Q8NEP7 349 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 REPS2Q8NFH8 660 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 MTIF3Q9H2K0 278 aaKnown RBP14.68□□□□□ -0.06
SNHG1-216ENST00000541416 ABHD16BQ9H3Z7 469 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 ZNF576Q9H609 170 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 NYAP2Q9P242 653 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 DDX19BQ9UMR2 479 aa14.68□□□□□ -0.06
SNHG1-216ENST00000541416 SPTBN5Q9NRC6 3674 aaKnown RBP14.68□□□□□ -0.06
SNHG1-216ENST00000541416 MYH7P12883 1935 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 F5H6K3 240 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 CST5P28325 142 aaPredicted RBP14.67□□□□□ -0.06
SNHG1-216ENST00000541416 SLC4A3P48751 1232 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 KLRC3Q07444 240 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 ACVR2BQ13705 512 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 GRIN2CQ14957 1233 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 PSRC1Q6PGN9 363 aaPredicted RBP14.67□□□□□ -0.06
SNHG1-216ENST00000541416 ANKRD35Q8N283 1001 aa14.67□□□□□ -0.06
SNHG1-216ENST00000541416 A0A0U1RQG5 324 aaPredicted RBP14.66□□□□□ -0.06
SNHG1-216ENST00000541416 ATP2A1O14983 1001 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 SNAI1O95863 264 aaPredicted RBP14.66□□□□□ -0.06
SNHG1-216ENST00000541416 FDX1P10109 184 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 SBK1Q52WX2 424 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 GNASQ5JWF2 1037 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 GIMAP6Q6P9H5 292 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 CPXCR1Q8N123 301 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 LENG1Q96BZ8 264 aaPredicted RBP14.66□□□□□ -0.06
SNHG1-216ENST00000541416 TBX21Q9UL17 535 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 SYNPO2Q9UMS6 1093 aa14.66□□□□□ -0.06
SNHG1-216ENST00000541416 DNAJC25-GNG10A0A024R161 153 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 ARVCFO00192 962 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 ASGR1P07306 291 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 OAZ1P54368 228 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 CCSAPQ6IQ19 270 aaPredicted RBP14.65□□□□□ -0.06
SNHG1-216ENST00000541416 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.65□□□□□ -0.06
SNHG1-216ENST00000541416 ZNF444Q8N0Y2 327 aaPredicted RBP14.65□□□□□ -0.06
SNHG1-216ENST00000541416 CHST13Q8NET6 341 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 GPATCH3Q96I76 525 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.65□□□□□ -0.067e-26■■□□□ 11.7
SNHG1-216ENST00000541416 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.65□□□□□ -0.06
SNHG1-216ENST00000541416 FEM1BQ9UK73 627 aa14.65□□□□□ -0.06
SNHG1-216ENST00000541416 MINDY4BA8MYZ0 360 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 TNFRSF10AO00220 468 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 NDUFB10O96000 172 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 GNAT2P19087 354 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 CDK7P50613 346 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 GJA9P57773 515 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 RAB30Q15771 203 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 CCDC144BQ3MJ40 725 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 SLFNL1Q499Z3 407 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 IL27Q8NEV9 243 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 ATXN2LQ8WWM7 1075 aaKnown RBP14.64□□□□□ -0.07
SNHG1-216ENST00000541416 KIFC2Q96AC6 838 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 NUP88Q99567 741 aaPredicted RBP14.64□□□□□ -0.07
SNHG1-216ENST00000541416 SEZ6LQ9BYH1 1024 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 LRRCC1Q9C099 1032 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 PUS7LQ9H0K6 701 aaKnown RBP14.64□□□□□ -0.07
SNHG1-216ENST00000541416 SLC38A10Q9HBR0 1119 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 ZBTB40Q9NUA8 1239 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 CLIP2Q9UDT6 1046 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 MSRAQ9UJ68 235 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 RIPK3Q9Y572 518 aa14.64□□□□□ -0.07
SNHG1-216ENST00000541416 MUC3AQ02505 3323 aa14.63□□□□□ -0.07
SNHG1-216ENST00000541416 SMIM22K7EJ46 135 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms