RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 GTF3C6Q969F1 213 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 WNK4Q96J92 1243 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 KIAA1683Q9H0B3 1180 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 CPVLQ9H3G5 476 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 GOPCQ9HD26 462 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 GPCPD1Q9NPB8 672 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 SH2B1Q9NRF2 756 aaPredicted RBP10.89□□□□□ -0.67
DDX55-208ENST00000541259 TLL2Q9Y6L7 1015 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 NID2Q14112 1375 aa10.89□□□□□ -0.67
DDX55-208ENST00000541259 PALM3A6NDB9 673 aaPredicted RBP10.88□□□□□ -0.67
DDX55-208ENST00000541259 TMEM88BA6NKF7 163 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 PLEKHA8P1O95397 391 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 PARP1P09874 1014 aaKnown RBP10.88□□□□□ -0.67
DDX55-208ENST00000541259 CALM1P0DP23 149 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 CALM2P0DP24 149 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 CALM3P0DP25 149 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 ZNF543Q08ER8 600 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 CUL4AQ13619 759 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 BECN1Q14457 450 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 SLC35G1Q2M3R5 365 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 FAM83BQ5T0W9 1011 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 CCDC82Q8N4S0 544 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 CTCFLQ8NI51 663 aaPredicted RBP10.88□□□□□ -0.67
DDX55-208ENST00000541259 KCNV2Q8TDN2 545 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 DCAF4Q8WV16 495 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 MAP3K14Q99558 947 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 UBA5Q9GZZ9 404 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 SH2D4AQ9H788 454 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.88□□□□□ -0.67
DDX55-208ENST00000541259 SYNPO2Q9UMS6 1093 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 KCNH4Q9UQ05 1017 aa10.88□□□□□ -0.67
DDX55-208ENST00000541259 C2orf72A6NCS6 295 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 C19orf81C9J6K1 198 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 KLRF2D3W0D1 207 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 JAK2O60674 1132 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 BMP3P12645 472 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 SLC16A2P36021 539 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 SLC1A4P43007 532 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 ZNF157P51786 506 aaPredicted RBP10.87□□□□□ -0.67
DDX55-208ENST00000541259 RCAN1P53805 252 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 MOGSQ13724 837 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 NTRK3Q16288 839 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 CCDC96Q2M329 555 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 SH3D19Q5HYK7 790 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 SPRYD7Q5W111 196 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 RGMBQ6NW40 437 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 RASAL3Q86YV0 1011 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 SRBD1Q8N5C6 995 aaKnown RBP10.87□□□□□ -0.67
DDX55-208ENST00000541259 GMCL1Q96IK5 515 aa10.87□□□□□ -0.67
DDX55-208ENST00000541259 ISY1Q9ULR0 285 aaKnown RBP10.87□□□□□ -0.67
DDX55-208ENST00000541259 ABT1Q9ULW3 272 aaKnown RBP10.87□□□□□ -0.67
DDX55-208ENST00000541259 A0A0G2JLL6 359 aaPredicted RBP10.86□□□□□ -0.67
DDX55-208ENST00000541259 hCG_1642624A0A1W2PR95 340 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 TMEM232C9JQI7 657 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 CXCL11O14625 94 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 VCAM1P19320 739 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 APLP1P51693 650 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 USP14P54578 494 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 FUT2Q10981 343 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 ASPRV1Q53RT3 343 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 TREML2Q5T2D2 321 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 GADL1Q6ZQY3 521 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 TMTC3Q6ZXV5 915 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 PRRT2Q7Z6L0 340 aaPredicted RBP10.86□□□□□ -0.67
DDX55-208ENST00000541259 NSUN7Q8NE18 718 aaKnown RBP10.86□□□□□ -0.67
DDX55-208ENST00000541259 PIBF1Q8WXW3 757 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 PHKBQ93100 1093 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 C12orf42Q96LP6 360 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 VAT1LQ9HCJ6 419 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 FBXO28Q9NVF7 368 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 RBM28Q9NW13 759 aaKnown RBP10.86□□□□□ -0.67
DDX55-208ENST00000541259 TMOD4Q9NZQ9 345 aa10.86□□□□□ -0.67
DDX55-208ENST00000541259 FAM155AB1AL88 458 aaPredicted RBP10.85□□□□□ -0.67
DDX55-208ENST00000541259 CPLX1O14810 134 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 WDR46O15213 610 aaKnown RBP10.85□□□□□ -0.67
DDX55-208ENST00000541259 CYTH3O43739 400 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 FDPSP14324 419 aaKnown RBP10.85□□□□□ -0.67
DDX55-208ENST00000541259 IFNAR1P17181 557 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 KIF5BP33176 963 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 SNAP25P60880 206 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 FOXK1P85037 733 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 SNAPC2Q13487 334 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 GPATCH4Q5T3I0 446 aaKnown RBP10.85□□□□□ -0.67
DDX55-208ENST00000541259 LPAR1Q92633 364 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 DDX11Q96FC9 970 aa10.85□□□□□ -0.67
DDX55-208ENST00000541259 IPO9Q96P70 1041 aaKnown RBP10.85□□□□□ -0.67
DDX55-208ENST00000541259 RPAP3Q9H6T3 665 aaPredicted RBP10.85□□□□□ -0.67
DDX55-208ENST00000541259 CNTNAP5Q8WYK1 1306 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 CCDC196A0A1B0GTZ2 297 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 PTPDC1A2A3K4 754 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 SLC10A3P09131 477 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 ZBTB48P10074 688 aaPredicted RBP10.84□□□□□ -0.67
DDX55-208ENST00000541259 GNAQP50148 359 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 HTRA3P83110 453 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 DSG2Q14126 1118 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 PPP2R5BQ15173 497 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 CYP4F22Q6NT55 531 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 GPAT2Q6NUI2 795 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 BTNL9Q6UXG8 535 aa10.84□□□□□ -0.67
DDX55-208ENST00000541259 CATSPERGQ6ZRH7 1159 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms