RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 LRCH3Q96II8 777 aa18.17■□□□□ 0.5
UBE3B-211ENST00000539843 PRDM5Q9NQX1 630 aaPredicted RBP18.17■□□□□ 0.5
UBE3B-211ENST00000539843 RLFQ13129 1914 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 SOX1O00570 391 aaPredicted RBP18.16■□□□□ 0.5
UBE3B-211ENST00000539843 ATP2A1O14983 1001 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 BMP3P12645 472 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 OAZ1P54368 228 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 TFAP4Q01664 338 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 LRRC41Q15345 812 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 FAM47AQ5JRC9 791 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 SLFN13Q68D06 897 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 SLC39A5Q6ZMH5 540 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 LRRC47Q8N1G4 583 aaKnown RBP18.16■□□□□ 0.5
UBE3B-211ENST00000539843 ANKRD35Q8N283 1001 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 REPS2Q8NFH8 660 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 NEDD1Q8NHV4 660 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 EVI5LQ96CN4 794 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 FRMPD3Q5JV73 1810 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 PLIN4Q96Q06 1357 aa18.16■□□□□ 0.5
UBE3B-211ENST00000539843 IGKV6D-41A0A0C4DH26 115 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 TSPY2A6NKD2 308 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 ADCYAP1R1P41586 468 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 STAT2P52630 851 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 FAM160B2Q86V87 743 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 CHST13Q8NET6 341 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 CHURC1Q8WUH1 139 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 SPC25Q9HBM1 224 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 STX8Q9UNK0 236 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 SYNGAP1Q96PV0 1343 aa18.15■□□□□ 0.5
UBE3B-211ENST00000539843 SLC1A4P43007 532 aa18.14■□□□□ 0.49
UBE3B-211ENST00000539843 AAMPQ13685 434 aa18.14■□□□□ 0.49
UBE3B-211ENST00000539843 SEC62Q99442 399 aaKnown RBP18.14■□□□□ 0.49
UBE3B-211ENST00000539843 SLC38A10Q9HBR0 1119 aa18.14■□□□□ 0.49
UBE3B-211ENST00000539843 ZHX1Q9UKY1 873 aaPredicted RBP18.14■□□□□ 0.49
UBE3B-211ENST00000539843 FAM184BQ9ULE4 1060 aa18.14■□□□□ 0.49
UBE3B-211ENST00000539843 TMEM232C9JQI7 657 aa18.13■□□□□ 0.49
UBE3B-211ENST00000539843 ZNF467Q7Z7K2 595 aaPredicted RBP18.13■□□□□ 0.49
UBE3B-211ENST00000539843 TICAM2Q86XR7 235 aa18.13■□□□□ 0.49
UBE3B-211ENST00000539843 DEFB123Q8N688 67 aa18.13■□□□□ 0.49
UBE3B-211ENST00000539843 OTUD7AQ8TE49 926 aaPredicted RBP18.13■□□□□ 0.49
UBE3B-211ENST00000539843 NUP133Q8WUM0 1156 aa18.13■□□□□ 0.49
UBE3B-211ENST00000539843 FERMT2Q96AC1 680 aa18.13■□□□□ 0.49
UBE3B-211ENST00000539843 RAVER2Q9HCJ3 691 aaKnown RBP18.13■□□□□ 0.49
UBE3B-211ENST00000539843 PHF24Q9UPV7 400 aa18.13■□□□□ 0.49
UBE3B-211ENST00000539843 GREB1LQ9C091 1923 aaPredicted RBP18.13■□□□□ 0.49
UBE3B-211ENST00000539843 PARP14Q460N5 1801 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 TRIM60Q495X7 471 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 C1orf53Q5VUE5 145 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 GMCL1Q96IK5 515 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 CRBNQ96SW2 442 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 ACAD9Q9H845 621 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 HELLSQ9NRZ9 838 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 TOMM22Q9NS69 142 aa18.12■□□□□ 0.49
UBE3B-211ENST00000539843 RANBP6O60518 1105 aaKnown RBP18.11■□□□□ 0.49
UBE3B-211ENST00000539843 PGK1P00558 417 aa18.11■□□□□ 0.49
UBE3B-211ENST00000539843 HDAC1Q13547 482 aaPredicted RBP18.11■□□□□ 0.49
UBE3B-211ENST00000539843 SNX17Q15036 470 aa18.11■□□□□ 0.49
UBE3B-211ENST00000539843 TKFCQ3LXA3 575 aa18.11■□□□□ 0.49
UBE3B-211ENST00000539843 MAMDC4Q6UXC1 1216 aa18.11■□□□□ 0.49
UBE3B-211ENST00000539843 STAG1Q8WVM7 1258 aa18.11■□□□□ 0.49
UBE3B-211ENST00000539843 TSEN34Q9BSV6 310 aaKnown RBP18.11■□□□□ 0.49
UBE3B-211ENST00000539843 COL11A1P12107 1806 aaPredicted RBP18.1■□□□□ 0.49
UBE3B-211ENST00000539843 MOXD2PA6NHM9 499 aa18.1■□□□□ 0.49
UBE3B-211ENST00000539843 ZNF865P0CJ78 1059 aaPredicted RBP18.1■□□□□ 0.49
UBE3B-211ENST00000539843 MFAP1P55081 439 aaKnown RBP18.1■□□□□ 0.49
UBE3B-211ENST00000539843 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.1■□□□□ 0.49
UBE3B-211ENST00000539843 ABHD16BQ9H3Z7 469 aa18.1■□□□□ 0.49
UBE3B-211ENST00000539843 STARD7Q9NQZ5 370 aa18.1■□□□□ 0.49
UBE3B-211ENST00000539843 HOMER2Q9NSB8 354 aa18.1■□□□□ 0.49
UBE3B-211ENST00000539843 RIPK3Q9Y572 518 aa18.1■□□□□ 0.49
UBE3B-211ENST00000539843 TACC3Q9Y6A5 838 aa18.1■□□□□ 0.49
UBE3B-211ENST00000539843 RANBP2P49792 3224 aaKnown RBP18.09■□□□□ 0.49
UBE3B-211ENST00000539843 DNAJC25-GNG10A0A024R161 153 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 TRIM6-TRIM34B2RNG4 842 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 POTEB2H3BUK9 544 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 CLTBP09497 229 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 PDE1AP54750 535 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 CCDC129Q6ZRS4 1044 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 PCSK9Q8NBP7 692 aaKnown RBP18.09■□□□□ 0.49
UBE3B-211ENST00000539843 SLC17A8Q8NDX2 589 aa18.09■□□□□ 0.49
UBE3B-211ENST00000539843 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.09■□□□□ 0.49
UBE3B-211ENST00000539843 MROH7Q68CQ1 1323 aa18.08■□□□□ 0.49
UBE3B-211ENST00000539843 A0A1W2PQ45 241 aaPredicted RBP18.08■□□□□ 0.48
UBE3B-211ENST00000539843 A0A1W2PQY0 241 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 DCDC2CA8MYV0 355 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 PLA2G6O60733 806 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 DUSP11O75319 330 aaKnown RBP18.08■□□□□ 0.48
UBE3B-211ENST00000539843 TAL1P17542 331 aaPredicted RBP18.08■□□□□ 0.48
UBE3B-211ENST00000539843 MCCP23508 829 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 CTDSPL2Q05D32 466 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 ACVR2BQ13705 512 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 CCDC96Q2M329 555 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 MCMDC2Q4G0Z9 681 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 GLT1D1Q96MS3 346 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 RWDD1Q9H446 243 aaPredicted RBP18.08■□□□□ 0.48
UBE3B-211ENST00000539843 PDLIM7Q9NR12 457 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 RNF146Q9NTX7 359 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 ANAPC4Q9UJX5 808 aa18.08■□□□□ 0.48
UBE3B-211ENST00000539843 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.08■□□□□ 0.48
UBE3B-211ENST00000539843 MYH4Q9Y623 1939 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms