RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 IRS4O14654 1257 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 PPP1R37O75864 691 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 SMNDC1O75940 238 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 EPB41P11171 864 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 C1QTNF12Q5T7M4 302 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 DPP8Q6V1X1 898 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 LLPHQ9BRT6 129 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 FHDC1Q9C0D6 1143 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 ATP2C2O75185 946 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 TBX2Q13207 712 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 TTLL12Q14166 644 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 GNPTABQ3T906 1256 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 CAVIN4Q5BKX8 364 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 CRELD2Q6UXH1 353 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 KSR2Q6VAB6 950 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 CCNI2Q6ZMN8 369 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 KDM4CQ9H3R0 1056 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 PHAXQ9H814 394 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 SRRM3A6NNA2 597 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 ATP6V1G2O95670 118 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 FAM107AO95990 144 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 TPP2P29144 1249 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 MXRA7P84157 204 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 DYNC1I2Q13409 638 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 PTGISQ16647 500 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 DYDC1Q8WWB3 177 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 TSGA10Q9BZW7 698 aa12.1□□□□□ -0.47
CLSTN3-207ENST00000537408 IFIT1P09914 478 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 GNAT1P11488 350 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 NNTQ13423 1086 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 ENOX2Q16206 610 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 ARMCX6Q7L4S7 300 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 G2E3Q7L622 706 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 CCDC24Q8N4L8 307 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 TCEANC2Q96MN5 208 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.09□□□□□ -0.473e-11■■■■■ 236.2
CLSTN3-207ENST00000537408 MAP3K15Q6ZN16 1313 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 SLC27A2O14975 620 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 CREB3O43889 395 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 CYP19A1P11511 503 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 PPP1R7Q15435 360 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 KDM7AQ6ZMT4 941 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 ARMC9Q7Z3E5 817 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 TMC4Q7Z404 712 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 NCAPG2Q86XI2 1143 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 MYLK4Q86YV6 388 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 CACNA2D3Q8IZS8 1091 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 LINC00116Q8NCU8 138 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 RUBCNQ92622 972 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 ERVV-1B6SEH8 477 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 PDIA5Q14554 519 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 CNGA4Q8IV77 575 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 CCDC51Q96ER9 411 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 MASTLQ96GX5 879 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 SAR1BQ9Y6B6 198 aa12.09□□□□□ -0.47
CLSTN3-207ENST00000537408 RASSF10A6NK89 507 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 AGPSO00116 658 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 NPR1P16066 1061 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 TGFB2P61812 414 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 NECTIN1Q15223 517 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 RTKN2Q8IZC4 609 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 MYCBPAPQ8TBZ2 947 aa12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 FTOQ9C0B1 505 aaKnown RBP eCLIP12.08□□□□□ -0.47
CLSTN3-207ENST00000537408 MEGF6O75095 1541 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 CFAP58Q5T655 872 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 RNF181Q9P0P0 153 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 SLIT3O75094 1523 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 COL3A1P02461 1466 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 SPTLC2O15270 562 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 ANKRD20A8PQ5CZ79 823 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 ACBD5Q5T8D3 534 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 HIBCHQ6NVY1 386 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 TMTC1Q8IUR5 882 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 LMNTD2Q8IXW0 634 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 TEX9Q8N6V9 391 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 STAMBPL1Q96FJ0 436 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 TAOK3Q9H2K8 898 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 INCENPQ9NQS7 918 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 RTEL1Q9NZ71 1219 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 ZFATQ9P243 1243 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 PPIP5K2O43314 1243 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 NR1D1P20393 614 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 EPHB4P54760 987 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 HDLBPQ00341 1268 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 MTF1Q14872 753 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 PTPN21Q16825 1174 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 ACCSLQ4AC99 568 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 METTL24Q5JXM2 366 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 TTC39AQ5SRH9 613 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 RASGRP2Q7LDG7 609 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 CPLX3Q8WVH0 158 aa12.08□□□□□ -0.48
CLSTN3-207ENST00000537408 CARMIL3Q8ND23 1372 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 ANP32DO95626 131 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 PYGBP11216 843 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 SYKP43405 635 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 EBF2Q9HAK2 575 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 KCNQ3O43525 872 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 ZMYND10O75800 440 aa12.07□□□□□ -0.48
CLSTN3-207ENST00000537408 TCIRG1Q13488 830 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms