RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 SPON2Q9BUD6 331 aa5.83□□□□□ -1.48
USP48-215ENST00000534705 DDX41Q9UJV9 622 aaKnown RBP5.83□□□□□ -1.48
USP48-215ENST00000534705 CRKP46108 304 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 TEKQ02763 1124 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 APOBRQ0VD83 1088 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 MLECQ14165 292 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 CNKSR3Q6P9H4 555 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 SLITRK4Q8IW52 837 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 EHMT1Q9H9B1 1298 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 REV1Q9UBZ9 1251 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 CNOT11Q9UKZ1 510 aaKnown RBP5.82□□□□□ -1.48
USP48-215ENST00000534705 CORINQ9Y5Q5 1042 aa5.82□□□□□ -1.48
USP48-215ENST00000534705 IRS4O14654 1257 aaPredicted RBP5.81□□□□□ -1.48
USP48-215ENST00000534705 INSRRP14616 1297 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 SIRT2Q8IXJ6 389 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 ZNF654Q8IZM8 581 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 FAM13CQ8NE31 585 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 RNF141Q8WVD5 230 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 GPR20Q99678 358 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 CNTD2Q9H8S5 307 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 EPB41L4AQ9HCS5 686 aaPredicted RBP5.81□□□□□ -1.48
USP48-215ENST00000534705 EBF1Q9UH73 591 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 PALD1Q9ULE6 856 aa5.81□□□□□ -1.48
USP48-215ENST00000534705 RB1CC1Q8TDY2 1594 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 RBAK-RBAKDNI3L0D1 243 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 TLR3O15455 904 aaKnown RBP5.8□□□□□ -1.48
USP48-215ENST00000534705 NRDCO43847 1150 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 VIPR1P32241 457 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 ZNF165P49910 485 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 EPHB3P54753 998 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 YBX1P67809 324 aaKnown RBP5.8□□□□□ -1.48
USP48-215ENST00000534705 HDLBPQ00341 1268 aaKnown RBP5.8□□□□□ -1.48
USP48-215ENST00000534705 PUM1Q14671 1186 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP48-215ENST00000534705 SLC14A2Q15849 920 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 VMACQ2NL98 169 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 ZNF394Q53GI3 561 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 LINC01356Q8N9X3 169 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 MZB1Q8WU39 189 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 EAF1Q96JC9 268 aaPredicted RBP5.8□□□□□ -1.48
USP48-215ENST00000534705 SPATA32Q96LK8 384 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 BRMS1Q9HCU9 246 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 PODXL2Q9NZ53 605 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 UBP1Q9NZI7 540 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 GMIPQ9P107 970 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 ZNF281Q9Y2X9 895 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 PCDHB14Q9Y5E9 798 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 NACADO15069 1562 aa5.8□□□□□ -1.48
USP48-215ENST00000534705 MEIS3P2A8K0S8 358 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 GRIN3BO60391 1043 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 KIR2DL1P43626 348 aaPredicted RBP5.79□□□□□ -1.48
USP48-215ENST00000534705 KIR2DL2P43627 348 aaPredicted RBP5.79□□□□□ -1.48
USP48-215ENST00000534705 GALK1P51570 392 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 CLEC16AQ2KHT3 1053 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 FAM129CQ86XR2 697 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 TMEFF1Q8IYR6 380 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 NKD1Q969G9 470 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 BDH2Q9BUT1 245 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 PCDHGB7Q9Y5F8 929 aa5.79□□□□□ -1.48
USP48-215ENST00000534705 NOTOA8MTQ0 251 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 IMPDH2P12268 514 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 PNLIPP16233 465 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 RACK1P63244 317 aaKnown RBP5.78□□□□□ -1.48
USP48-215ENST00000534705 COL9A2Q14055 689 aaPredicted RBP5.78□□□□□ -1.48
USP48-215ENST00000534705 LRRFIP1Q32MZ4 808 aaKnown RBP5.78□□□□□ -1.48
USP48-215ENST00000534705 SEZ6Q53EL9 994 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 RNF111Q6ZNA4 994 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 SYT8Q8NBV8 401 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 ENOX1Q8TC92 643 aaKnown RBP5.78□□□□□ -1.48
USP48-215ENST00000534705 G6PC3Q9BUM1 346 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 ADAM7Q9H2U9 754 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 ZMYM5Q9UJ78 669 aa5.78□□□□□ -1.48
USP48-215ENST00000534705 DNAJA2O60884 412 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 CDR1P51861 262 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 CAP1Q01518 475 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 TMEM62Q0P6H9 643 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 ZFYVE27Q5T4F4 411 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 CDCP2Q5VXM1 449 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 NT5DC4Q86YG4 428 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 RASGRP4Q8TDF6 673 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 CCDC74BQ96LY2 380 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 ASPNQ9BXN1 380 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 TGIF2Q9GZN2 237 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 ASCC2Q9H1I8 757 aaPredicted RBP5.77□□□□□ -1.49
USP48-215ENST00000534705 KLHL3Q9UH77 587 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 ZNRF3Q9ULT6 936 aa5.77□□□□□ -1.49
USP48-215ENST00000534705 ZCCHC6Q5VYS8 1495 aaKnown RBP5.77□□□□□ -1.49
USP48-215ENST00000534705 MYO15BQ96JP2 1530 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 CHURC1-FNTBB4DL54 471 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 LRRN2O75325 713 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 RPL10P27635 214 aaKnown RBP5.76□□□□□ -1.49
USP48-215ENST00000534705 CCNFP41002 786 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 GJA8P48165 433 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 RAD51AP2Q09MP3 1159 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 OVOS1Q6IE37 1185 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 NLGN1Q8N2Q7 840 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 PWWP2AQ96N64 755 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 CNNM2Q9H8M5 875 aa5.76□□□□□ -1.49
USP48-215ENST00000534705 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.76□□□□□ -1.49
USP48-215ENST00000534705 UPK3BL1B0FP48 263 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 UPK3BL2E5RIL1 263 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms