RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CREB3L3Q68CJ9 461 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 KCTD1Q719H9 257 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 FAM160B2Q86V87 743 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 MB21D2Q8IYB1 491 aaPredicted RBP15.26■□□□□ 0.03
VPS28-216ENST00000533806 ABRAQ8N0Z2 381 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 CHURC1Q8WUH1 139 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 KIFC2Q96AC6 838 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 DOCK3Q8IZD9 2030 aa15.26■□□□□ 0.03
VPS28-216ENST00000533806 ZNF536O15090 1300 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 OAZ1P54368 228 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 ANTXR2P58335 489 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 ZNF543Q08ER8 600 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 MTFR1Q15390 333 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 TTBK2Q6IQ55 1244 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 SAMD1Q6SPF0 538 aaPredicted RBP15.25■□□□□ 0.03
VPS28-216ENST00000533806 CASC1Q6TDU7 716 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.25■□□□□ 0.03
VPS28-216ENST00000533806 CCAR1Q8IX12 1150 aaKnown RBP15.25■□□□□ 0.03
VPS28-216ENST00000533806 PNMA1Q8ND90 353 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 NCOA7Q8NI08 942 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 TRIB2Q92519 343 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 TEX13BQ9BXU2 312 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 PRR12Q9ULL5 1215 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 RIPK3Q9Y572 518 aa15.25■□□□□ 0.03
VPS28-216ENST00000533806 POTEFA5A3E0 1075 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 ZBED4O75132 1171 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 CYP2B6P20813 491 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 RGS2P41220 211 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 SOX10P56693 466 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 TRDNQ13061 729 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 PLS1Q14651 629 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 TSGA10IPQ3SY00 556 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 MAP3K21Q5TCX8 1036 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 IGDCC4Q8TDY8 1250 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 CHMP4CQ96CF2 233 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 APBA2Q99767 749 aa15.24■□□□□ 0.03
VPS28-216ENST00000533806 COBLO75128 1261 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 HMGCRP04035 888 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 INHAP05111 366 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 ADORA2AP29274 412 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 COPB2P35606 906 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 TRIM32Q13049 653 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 CCL14Q16627 93 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 NCAPG2Q86XI2 1143 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 TRMT44Q8IYL2 757 aaKnown RBP15.23■□□□□ 0.03
VPS28-216ENST00000533806 NPLOC4Q8TAT6 608 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 KCNB2Q92953 911 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 UBAC1Q9BSL1 405 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 KAT14Q9H8E8 782 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 RAVER2Q9HCJ3 691 aaKnown RBP15.23■□□□□ 0.03
VPS28-216ENST00000533806 FLRT1Q9NZU1 646 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 IVNS1ABPQ9Y6Y0 642 aa15.23■□□□□ 0.03
VPS28-216ENST00000533806 FRMPD2Q68DX3 1309 aaPredicted RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 MKI67P46013 3256 aaKnown RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 FCER1AP12319 257 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 CCL5P13501 91 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 SLC16A2P36021 539 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 CCDC96Q2M329 555 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 GPATCH4Q5T3I0 446 aaKnown RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 IFIT1BQ5T764 474 aaKnown RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 WDR78Q5VTH9 848 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 SNRNP48Q6IEG0 339 aaKnown RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 RALYLQ86SE5 291 aaKnown RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 RASEFQ8IZ41 740 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 MTA3Q9BTC8 594 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 UNC93B1Q9H1C4 597 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 RANBP17Q9H2T7 1088 aaKnown RBP15.22■□□□□ 0.03
VPS28-216ENST00000533806 SENP2Q9HC62 589 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 GPCPD1Q9NPB8 672 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 MTMR7Q9Y216 660 aa15.22■□□□□ 0.03
VPS28-216ENST00000533806 GJB1P08034 283 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 UBXN2AP68543 259 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 SYDE2Q5VT97 1194 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 CHST3Q7LGC8 479 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 CPXCR1Q8N123 301 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 AGBL1Q96MI9 1066 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 PAK6Q9NQU5 681 aaPredicted RBP15.21■□□□□ 0.03
VPS28-216ENST00000533806 BIN2Q9UBW5 565 aaPredicted RBP15.21■□□□□ 0.03
VPS28-216ENST00000533806 ZNF236Q9UL36 1845 aa15.21■□□□□ 0.03
VPS28-216ENST00000533806 TNRC18O15417 2968 aaPredicted RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 DNAJC25-GNG10A0A024R161 153 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 IFIT3O14879 490 aaKnown RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 GOLGA8HP0CJ92 632 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 EN2P19622 333 aaPredicted RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 SNAP25P60880 206 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 CACNB2Q08289 660 aaPredicted RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 TROAPQ12815 778 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 IKQ13123 557 aaPredicted RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 ZNF792Q3KQV3 632 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 OLFML2BQ68BL8 750 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 CHST13Q8NET6 341 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 TMEM106CQ9BVX2 250 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 LY9Q9HBG7 655 aa15.2■□□□□ 0.02
VPS28-216ENST00000533806 CWC22Q9HCG8 908 aaKnown RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 KIAA0100Q14667 2235 aaKnown RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 COL11A1P12107 1806 aaPredicted RBP15.2■□□□□ 0.02
VPS28-216ENST00000533806 RPTORQ8N122 1335 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 EPB41L2O43491 1005 aaKnown RBP15.19■□□□□ 0.02
VPS28-216ENST00000533806 PRC1O43663 620 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 MYCP01106 439 aaPredicted RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms