RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PFASO15067 1338 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 IGHA2P01877 340 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 PGK2P07205 417 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 NUCB1Q02818 461 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 NMIQ13287 307 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-211ENST00000533492 PRAMEF19Q5SWL8 479 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 DDX11Q96FC9 970 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 ANAPC4Q9UJX5 808 aa18.3■□□□□ 0.52
CPSF1-211ENST00000533492 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.3■□□□□ 0.52
CPSF1-211ENST00000533492 TRIOBPQ9H2D6 2365 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 SEPT4O43236 478 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 FGAP02671 866 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 HSPD1P10809 573 aaKnown RBP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 COL6A1P12109 1028 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 FXR1P51114 621 aaKnown RBP eCLIP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 MFAP1P55081 439 aaKnown RBP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 IKQ13123 557 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 PLEKHM2Q8IWE5 1019 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 ARRDC4Q8NCT1 418 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 CHURC1Q8WUH1 139 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 CHMP4CQ96CF2 233 aa18.29■□□□□ 0.52
CPSF1-211ENST00000533492 SENP6Q9GZR1 1112 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 ZMYND8Q9ULU4 1186 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 DIS3Q9Y2L1 958 aaKnown RBP18.29■□□□□ 0.52
CPSF1-211ENST00000533492 ALPK3Q96L96 1907 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 TMEM232C9JQI7 657 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 ATP2A1O14983 1001 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 MYCNP04198 464 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-211ENST00000533492 FDX1P10109 184 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 MCCP23508 829 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 SLC1A4P43007 532 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 ZNF792Q3KQV3 632 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 RRP12Q5JTH9 1297 aaKnown RBP18.28■□□□□ 0.52
CPSF1-211ENST00000533492 ANO1Q5XXA6 986 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 TINF2Q9BSI4 451 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 OSBPL3Q9H4L5 887 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 SLC38A10Q9HBR0 1119 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 RAVER2Q9HCJ3 691 aaKnown RBP18.28■□□□□ 0.52
CPSF1-211ENST00000533492 RIPK3Q9Y572 518 aa18.28■□□□□ 0.52
CPSF1-211ENST00000533492 CCDC171Q6TFL3 1326 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 DNM1LO00429 736 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 ORC4O43929 436 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 SDSP20132 328 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 STAT2P52630 851 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 ZNF589Q86UQ0 364 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-211ENST00000533492 FAM160B2Q86V87 743 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 IL17RBQ9NRM6 502 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 NRBP1Q9UHY1 535 aa18.27■□□□□ 0.52
CPSF1-211ENST00000533492 NMT2O60551 498 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 SYN1P17600 705 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 OAZ1P54368 228 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 LRRC26Q2I0M4 334 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 GJC2Q5T442 439 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-211ENST00000533492 ANKRD35Q8N283 1001 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 STAG1Q8WVM7 1258 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 GMCL1Q96IK5 515 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 PRO3102Q9H379 93 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 FBXO40Q9UH90 709 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 MTMR7Q9Y216 660 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 FRMPD3Q5JV73 1810 aa18.26■□□□□ 0.51
CPSF1-211ENST00000533492 KBTBD13C9JR72 458 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 FGRP09769 529 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 HAND2P61296 217 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 RCSD1Q6JBY9 416 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 CHST13Q8NET6 341 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 DIAPH3Q9NSV4 1193 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 PCDH10Q9P2E7 1040 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 CNPY2Q9Y2B0 182 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 TACC3Q9Y6A5 838 aa18.25■□□□□ 0.51
CPSF1-211ENST00000533492 PLXNA1Q9UIW2 1896 aa18.24■□□□□ 0.51
CPSF1-211ENST00000533492 HIP1O00291 1037 aa18.24■□□□□ 0.51
CPSF1-211ENST00000533492 RARBP10826 455 aa18.24■□□□□ 0.51
CPSF1-211ENST00000533492 ATN1P54259 1190 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-211ENST00000533492 CWC27Q6UX04 472 aaKnown RBP18.24■□□□□ 0.51
CPSF1-211ENST00000533492 MFSD6Q6ZSS7 791 aa18.24■□□□□ 0.51
CPSF1-211ENST00000533492 KCTD1Q719H9 257 aa18.24■□□□□ 0.51
CPSF1-211ENST00000533492 MSL3Q8N5Y2 521 aaKnown RBP18.24■□□□□ 0.51
CPSF1-211ENST00000533492 HOMER2Q9NSB8 354 aa18.24■□□□□ 0.51
CPSF1-211ENST00000533492 ZMYM6O95789 1325 aa18.23■□□□□ 0.51
CPSF1-211ENST00000533492 SMCHD1A6NHR9 2005 aa18.23■□□□□ 0.51
CPSF1-211ENST00000533492 A0A1W2PPC1 479 aa18.23■□□□□ 0.51
CPSF1-211ENST00000533492 PLA2G6O60733 806 aa18.23■□□□□ 0.51
CPSF1-211ENST00000533492 CCDC96Q2M329 555 aa18.23■□□□□ 0.51
CPSF1-211ENST00000533492 DNAJC25-GNG10A0A024R161 153 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 ZNF213O14771 459 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 PCP11498 1178 aaKnown RBP18.22■□□□□ 0.51
CPSF1-211ENST00000533492 AKR1A1P14550 325 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 TAL1P17542 331 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-211ENST00000533492 AKNAD1Q5T1N1 836 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 DCAF4Q8WV16 495 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 GDF15Q99988 308 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 RNF41Q9H4P4 317 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-211ENST00000533492 XPNPEP3Q9NQH7 507 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 TCP11L1Q9NUJ3 509 aa18.22■□□□□ 0.51
CPSF1-211ENST00000533492 ZNF865P0CJ78 1059 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-211ENST00000533492 TOP1P11387 765 aaKnown RBP18.21■□□□□ 0.51
CPSF1-211ENST00000533492 BMP8BP34820 402 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 MAGEA10P43363 369 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-211ENST00000533492 NOVP48745 357 aa18.21■□□□□ 0.51
CPSF1-211ENST00000533492 LRRC41Q15345 812 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms