RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 YTHDC1Q96MU7 727 aaKnown RBP21.19■□□□□ 0.98
PCF11-206ENST00000533018 LBHD1Q9BQE6 289 aaPredicted RBP21.19■□□□□ 0.98
PCF11-206ENST00000533018 TINF2Q9BSI4 451 aa21.19■□□□□ 0.98
PCF11-206ENST00000533018 ATP11BQ9Y2G3 1177 aa21.19■□□□□ 0.98
PCF11-206ENST00000533018 RARBP10826 455 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 RTP1P59025 263 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 ZNF792Q3KQV3 632 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 CCDC129Q6ZRS4 1044 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 MKL1Q969V6 931 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 CHMP4CQ96CF2 233 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 FEM1BQ9UK73 627 aa21.18■□□□□ 0.98
PCF11-206ENST00000533018 DIS3Q9Y2L1 958 aaKnown RBP21.18■□□□□ 0.98
PCF11-206ENST00000533018 SLFN13Q68D06 897 aa21.17■□□□□ 0.98
PCF11-206ENST00000533018 SLC39A5Q6ZMH5 540 aa21.17■□□□□ 0.98
PCF11-206ENST00000533018 NEDD1Q8NHV4 660 aa21.17■□□□□ 0.98
PCF11-206ENST00000533018 FERMT2Q96AC1 680 aa21.17■□□□□ 0.98
PCF11-206ENST00000533018 RAVER2Q9HCJ3 691 aaKnown RBP21.17■□□□□ 0.98
PCF11-206ENST00000533018 XPNPEP3Q9NQH7 507 aa21.17■□□□□ 0.98
PCF11-206ENST00000533018 CNPY2Q9Y2B0 182 aa21.17■□□□□ 0.98
PCF11-206ENST00000533018 BMP3P12645 472 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 ADCYAP1R1P41586 468 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 IKQ13123 557 aaPredicted RBP21.16■□□□□ 0.98
PCF11-206ENST00000533018 LRRC41Q15345 812 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 GMCL1P1Q8NEA9 526 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 EVI5LQ96CN4 794 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 NRBP1Q9UHY1 535 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 RIPK3Q9Y572 518 aa21.16■□□□□ 0.98
PCF11-206ENST00000533018 LAMA2P24043 3122 aaKnown RBP21.15■□□□□ 0.98
PCF11-206ENST00000533018 TSPY2A6NKD2 308 aa21.15■□□□□ 0.98
PCF11-206ENST00000533018 TAL1P17542 331 aaPredicted RBP21.15■□□□□ 0.98
PCF11-206ENST00000533018 CTDSPL2Q05D32 466 aa21.15■□□□□ 0.98
PCF11-206ENST00000533018 ANKRD35Q8N283 1001 aa21.15■□□□□ 0.98
PCF11-206ENST00000533018 PRDM5Q9NQX1 630 aaPredicted RBP21.15■□□□□ 0.98
PCF11-206ENST00000533018 SYNPO2Q9UMS6 1093 aa21.15■□□□□ 0.98
PCF11-206ENST00000533018 STX8Q9UNK0 236 aa21.15■□□□□ 0.98
PCF11-206ENST00000533018 TMEM232C9JQI7 657 aa21.14■□□□□ 0.97
PCF11-206ENST00000533018 PGK1P00558 417 aa21.14■□□□□ 0.97
PCF11-206ENST00000533018 LRIT3Q3SXY7 679 aa21.14■□□□□ 0.97
PCF11-206ENST00000533018 RNF180Q86T96 592 aa21.14■□□□□ 0.97
PCF11-206ENST00000533018 SLC38A10Q9HBR0 1119 aa21.14■□□□□ 0.97
PCF11-206ENST00000533018 PLIN4Q96Q06 1357 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 SALL3Q9BXA9 1300 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 COL6A3P12111 3177 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 AKR1A1P14550 325 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 SLC1A4P43007 532 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 HDAC1Q13547 482 aaPredicted RBP21.13■□□□□ 0.97
PCF11-206ENST00000533018 TRIM60Q495X7 471 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 INCENPQ9NQS7 918 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 HOMER2Q9NSB8 354 aa21.13■□□□□ 0.97
PCF11-206ENST00000533018 ATP2A1O14983 1001 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 RANBP6O60518 1105 aaKnown RBP21.12■□□□□ 0.97
PCF11-206ENST00000533018 ZNF865P0CJ78 1059 aaPredicted RBP21.12■□□□□ 0.97
PCF11-206ENST00000533018 MCCP23508 829 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 STAT2P52630 851 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 PDE1AP54750 535 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 PPP4R3BQ5MIZ7 849 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 TOMM22Q9NS69 142 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 FBXO40Q9UH90 709 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 ZHX1Q9UKY1 873 aaPredicted RBP21.12■□□□□ 0.97
PCF11-206ENST00000533018 MTMR7Q9Y216 660 aa21.12■□□□□ 0.97
PCF11-206ENST00000533018 VPS53Q5VIR6 699 aa21.11■□□□□ 0.97
PCF11-206ENST00000533018 MSL3Q8N5Y2 521 aaKnown RBP21.11■□□□□ 0.97
PCF11-206ENST00000533018 DEFB123Q8N688 67 aa21.11■□□□□ 0.97
PCF11-206ENST00000533018 CHST13Q8NET6 341 aa21.11■□□□□ 0.97
PCF11-206ENST00000533018 CHURC1Q8WUH1 139 aa21.11■□□□□ 0.97
PCF11-206ENST00000533018 LENG1Q96BZ8 264 aaPredicted RBP21.11■□□□□ 0.97
PCF11-206ENST00000533018 HELLSQ9NRZ9 838 aa21.11■□□□□ 0.97
PCF11-206ENST00000533018 MCM3APO60318 1980 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 SYNGAP1Q96PV0 1343 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 TRIM6-TRIM34B2RNG4 842 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 NMT2O60551 498 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 OAZ1P54368 228 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 LNPKQ9C0E8 428 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 FAM184BQ9ULE4 1060 aa21.1■□□□□ 0.97
PCF11-206ENST00000533018 DNAJC25-GNG10A0A024R161 153 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 FOXP2O15409 715 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 FDX1P10109 184 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 MCMDC2Q4G0Z9 681 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 B4GALNT3Q6L9W6 998 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 GPR153Q6NV75 609 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 KCTD1Q719H9 257 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 Q7L0L9 218 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 FAM160B2Q86V87 743 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 STAG1Q8WVM7 1258 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 RILPL2Q969X0 211 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 GMCL1Q96IK5 515 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 FAM227BQ96M60 508 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 PHF24Q9UPV7 400 aa21.09■□□□□ 0.97
PCF11-206ENST00000533018 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.09■□□□□ 0.97
PCF11-206ENST00000533018 SNAI1O95863 264 aaPredicted RBP21.08■□□□□ 0.97
PCF11-206ENST00000533018 RRP12Q5JTH9 1297 aaKnown RBP21.08■□□□□ 0.97
PCF11-206ENST00000533018 CCDC174Q6PII3 467 aa21.08■□□□□ 0.97
PCF11-206ENST00000533018 MAMDC4Q6UXC1 1216 aa21.08■□□□□ 0.97
PCF11-206ENST00000533018 AGBL1Q96MI9 1066 aa21.08■□□□□ 0.97
PCF11-206ENST00000533018 IL17RBQ9NRM6 502 aa21.08■□□□□ 0.97
PCF11-206ENST00000533018 LTBP2Q14767 1821 aa21.07■□□□□ 0.96
PCF11-206ENST00000533018 A0A1W2PQ45 241 aaPredicted RBP21.07■□□□□ 0.96
PCF11-206ENST00000533018 A0A1W2PQY0 241 aa21.07■□□□□ 0.96
PCF11-206ENST00000533018 TLE2Q04725 743 aa21.07■□□□□ 0.96
PCF11-206ENST00000533018 ACVR2BQ13705 512 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms