RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 VEGFAP15692 232 aaPredicted RBP16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 MYL5Q02045 173 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 ZNF543Q08ER8 600 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 NONOQ15233 471 aaKnown RBP eCLIP16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 CERKLQ49MI3 558 aaPredicted RBP16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 TATDN1Q6P1N9 297 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 SH3RF1Q7Z6J0 888 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 C4orf32Q8N8J7 132 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 SYMPKQ92797 1274 aaKnown RBP16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 ERCC4Q92889 916 aaPredicted RBP16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 GSDMAQ96QA5 445 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 KCNQ5Q9NR82 932 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 TMOD2Q9NZR1 351 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 ATRNL1Q5VV63 1379 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 PNMA6FA0A0J9YX94 578 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 BIN1O00499 593 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 CBFA2T2O43439 604 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 C21orf2O43822 256 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 MCM7P33993 719 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 NFIAQ12857 509 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 SPECC1Q5M775 1068 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 DTHD1Q6ZMT9 781 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 CCDC125Q86Z20 511 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 DCAF4Q8WV16 495 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 AK8Q96MA6 479 aa16.79■□□□□ 0.28
ECHDC1-220ENST00000528402 MYH4Q9Y623 1939 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 VWA3AA6NCI4 1184 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 MYL1P05976 194 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 VIL1P09327 827 aaKnown RBP16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 ERCC5P28715 1186 aaPredicted RBP16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 GSDMDP57764 484 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 MORC3Q14149 939 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 TYW1BQ6NUM6 668 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 TMEM179Q6ZVK1 233 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 SPC24Q8NBT2 197 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 PIGSQ96S52 555 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 ZNF219Q9P2Y4 722 aaPredicted RBP16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 FAM198AQ9UFP1 575 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 MAN1B1Q9UKM7 699 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 MTMR7Q9Y216 660 aa16.78■□□□□ 0.28
ECHDC1-220ENST00000528402 MPHOSPH10O00566 681 aaKnown RBP16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 TERF1P54274 439 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 TGFB2P61812 414 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 NCAPHQ15003 741 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 CFAP100Q494V2 611 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 MCTP2Q6DN12 878 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 RSBN1LQ6PCB5 846 aaPredicted RBP16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 NEK8Q86SG6 692 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 ZSCAN29Q8IWY8 852 aaPredicted RBP16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 ENOX1Q8TC92 643 aaKnown RBP16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 DHX58Q96C10 678 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 EPSTI1Q96J88 318 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 NAP1L4Q99733 375 aaKnown RBP16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 CCSER1Q9C0I3 900 aa16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 HERC5Q9UII4 1024 aaKnown RBP16.77■□□□□ 0.27
ECHDC1-220ENST00000528402 KIF13BQ9NQT8 1826 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 NOM1Q5C9Z4 860 aaKnown RBP16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 FKBP1CQ5VVH2 108 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 CCDC186Q7Z3E2 898 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 TEX2Q8IWB9 1127 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 REXO1Q8N1G1 1221 aaKnown RBP16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 PDILTQ8N807 584 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 MTMR8Q96EF0 704 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 PAGE5Q96GU1 130 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 GTPBP4Q9BZE4 634 aaKnown RBP16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 UBA5Q9GZZ9 404 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 CUEDC2Q9H467 287 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 TTC12Q9H892 705 aaPredicted RBP16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 MAGEF1Q9HAY2 307 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 VAT1LQ9HCJ6 419 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 EP400Q96L91 3159 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 ADAMTSL1Q8N6G6 1762 aa16.76■□□□□ 0.27
ECHDC1-220ENST00000528402 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 DDTLA6NHG4 134 aaPredicted RBP16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 ADCY7P51828 1080 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 MRPL12P52815 198 aaKnown RBP16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 INF2Q27J81 1249 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 USP49Q70CQ1 688 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 HOMER1Q86YM7 354 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 LRRC47Q8N1G4 583 aaKnown RBP16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 LARGE2Q8N3Y3 721 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 OGFOD1Q8N543 542 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 AGBL3Q8NEM8 1001 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 FBXO41Q8TF61 875 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 RMND1Q9NWS8 449 aa16.75■□□□□ 0.27
ECHDC1-220ENST00000528402 YDJCA8MPS7 323 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 WNT7AO00755 349 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 ZBTB5O15062 677 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 GTPBP6O43824 516 aaPredicted RBP16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 DPYDQ12882 1025 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 NOLC1Q14978 699 aaKnown RBP eCLIP16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 E2F4Q16254 413 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 ABCB5Q2M3G0 1257 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 ZFPM1Q8IX07 1006 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 ADGRF4Q8IZF3 695 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 MTMR14Q8NCE2 650 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 GMCL1P1Q8NEA9 526 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 KIAA1524Q8TCG1 905 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 RIC8AQ9NPQ8 531 aa16.74■□□□□ 0.27
ECHDC1-220ENST00000528402 SPTLC3Q9NUV7 552 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms