RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 FCER1AP12319 257 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 CNGA1P29973 690 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 NOVP48745 357 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 ZNF792Q3KQV3 632 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 PRPF38AQ8NAV1 312 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 KIFC2Q96AC6 838 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 MAML3Q96JK9 1138 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 MMP19Q99542 508 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 RAVER2Q9HCJ3 691 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 DDX20Q9UHI6 824 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 FEM1BQ9UK73 627 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 SYNPO2Q9UMS6 1093 aa12.39□□□□□ -0.43
PRPF40B-204ENST00000527253 TSPY2A6NKD2 308 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 ATP2A1O14983 1001 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 RANBP6O60518 1105 aaKnown RBP12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 BMP3P12645 472 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 MCCP23508 829 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 HAND2P61296 217 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 SNRNP48Q6IEG0 339 aaKnown RBP12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 TEX13BQ9BXU2 312 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 SLC38A10Q9HBR0 1119 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 RBM27Q9P2N5 1060 aaKnown RBP12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 NR2E3Q9Y5X4 410 aa12.38□□□□□ -0.43
PRPF40B-204ENST00000527253 CCDC171Q6TFL3 1326 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 TMEM232C9JQI7 657 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 ZBED4O75132 1171 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 TAL1P17542 331 aaPredicted RBP12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 SLC4A3P48751 1232 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 FXR1P51114 621 aaKnown RBP eCLIP12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 KCTD2Q14681 263 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 ANO1Q5XXA6 986 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 TBC1D10CQ8IV04 446 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 C7orf61Q8IZ16 206 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 CPXCR1Q8N123 301 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 GMCL1Q96IK5 515 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 IL25Q9H293 177 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 SMCHD1A6NHR9 2005 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 FRMPD3Q5JV73 1810 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 ZNF536O15090 1300 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 ZMYM6O95789 1325 aa12.37□□□□□ -0.43
PRPF40B-204ENST00000527253 DNAJC25-GNG10A0A024R161 153 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 SNAP25P60880 206 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 LRRC26Q2I0M4 334 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 RRP12Q5JTH9 1297 aaKnown RBP12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 CWC27Q6UX04 472 aaKnown RBP12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 KCTD1Q719H9 257 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 STAG1Q8WVM7 1258 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 FGD4Q96M96 766 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 SLC5A4Q9NY91 659 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 ZMYND8Q9ULU4 1186 aaPredicted RBP12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 STX8Q9UNK0 236 aa12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 DIS3Q9Y2L1 958 aaKnown RBP12.36□□□□□ -0.43
PRPF40B-204ENST00000527253 SEPT4O43236 478 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 MSCO60682 206 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 COPB2P35606 906 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 SLC1A4P43007 532 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 GJC2Q5T442 439 aaPredicted RBP12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 TTBK2Q6IQ55 1244 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 RCSD1Q6JBY9 416 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 AGBL1Q96MI9 1066 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 TMEM47Q9BQJ4 181 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 TINF2Q9BSI4 451 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 TOMM22Q9NS69 142 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 TCP11L1Q9NUJ3 509 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 MTMR7Q9Y216 660 aa12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 RANBP2P49792 3224 aaKnown RBP12.35□□□□□ -0.43
PRPF40B-204ENST00000527253 PLXNA1Q9UIW2 1896 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 PLA2G6O60733 806 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 SNAI1O95863 264 aaPredicted RBP12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 ZNF865P0CJ78 1059 aaPredicted RBP12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 GSPT1P15170 499 aaKnown RBP12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 SYN1P17600 705 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 OAZ1P54368 228 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 AKNAD1Q5T1N1 836 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 SENP6Q9GZR1 1112 aaPredicted RBP12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 PRR12Q9ULL5 1215 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 NEDD4P46934 1319 aa12.34□□□□□ -0.43
PRPF40B-204ENST00000527253 DNM1LO00429 736 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 STAT2P52630 851 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 PPP4R3BQ5MIZ7 849 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 TTC22Q5TAA0 569 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 FAM160B2Q86V87 743 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 CHST13Q8NET6 341 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 CHURC1Q8WUH1 139 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 LENG1Q96BZ8 264 aaPredicted RBP12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 DDX11Q96FC9 970 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 GDF15Q99988 308 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 HOMER2Q9NSB8 354 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 DIAPH3Q9NSV4 1193 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 NRBP1Q9UHY1 535 aa12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 ISY1Q9ULR0 285 aaKnown RBP12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 CTDP1Q9Y5B0 961 aaPredicted RBP12.33□□□□□ -0.44
PRPF40B-204ENST00000527253 TOP1P11387 765 aaKnown RBP12.32□□□□□ -0.44
PRPF40B-204ENST00000527253 SLC16A2P36021 539 aa12.32□□□□□ -0.44
PRPF40B-204ENST00000527253 ATN1P54259 1190 aaPredicted RBP12.32□□□□□ -0.44
PRPF40B-204ENST00000527253 CNTN2Q02246 1040 aa12.32□□□□□ -0.44
PRPF40B-204ENST00000527253 LRRC41Q15345 812 aa12.32□□□□□ -0.44
PRPF40B-204ENST00000527253 CCDC174Q6PII3 467 aa12.32□□□□□ -0.44
PRPF40B-204ENST00000527253 MAMDC4Q6UXC1 1216 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms