RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 KIF4BQ2VIQ3 1234 aa8.84□□□□□ -0.99
SDCBP-210ENST00000522843 Q6ZS46 218 aa8.84□□□□□ -0.99
SDCBP-210ENST00000522843 SCAF8Q9UPN6 1271 aaKnown RBP8.84□□□□□ -0.99
SDCBP-210ENST00000522843 KNSTRNQ9Y448 316 aa8.84□□□□□ -0.99
SDCBP-210ENST00000522843 ANKRD36CQ5JPF3 1778 aa8.84□□□□□ -1
SDCBP-210ENST00000522843 LAMA3Q16787 3333 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 UBE2Q2LH0YL09 131 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 U2SURPO15042 1029 aaKnown RBP8.83□□□□□ -1
SDCBP-210ENST00000522843 COBLO75128 1261 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 BBOX1O75936 387 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 MED26O95402 600 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 GHRHP01286 108 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 IGLV1-40P01703 118 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 PSAPP07602 524 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 HSPA5P11021 654 aaKnown RBP8.83□□□□□ -1
SDCBP-210ENST00000522843 CAP1Q01518 475 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 SETDB1Q15047 1291 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 MIS18AQ9NYP9 233 aa8.83□□□□□ -1
SDCBP-210ENST00000522843 FKTNO75072 461 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 XYLBO75191 536 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 GLB1P16278 677 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 RPS12P25398 132 aaKnown RBP8.82□□□□□ -1
SDCBP-210ENST00000522843 PRKAR2BP31323 418 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 ZEB1P37275 1124 aaPredicted RBP8.82□□□□□ -1
SDCBP-210ENST00000522843 FKBP1BP68106 108 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 GRAPQ13588 217 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 ANGEL2Q5VTE6 544 aaKnown RBP8.82□□□□□ -1
SDCBP-210ENST00000522843 OTOP1Q7RTM1 612 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 LRP10Q7Z4F1 713 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 GRAPLQ8TC17 118 aaPredicted RBP8.82□□□□□ -1
SDCBP-210ENST00000522843 MYO19Q96H55 970 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 RBSNQ9H1K0 784 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 POLLQ9UGP5 575 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 USP20Q9Y2K6 914 aa8.82□□□□□ -1
SDCBP-210ENST00000522843 RRP7AQ9Y3A4 280 aaKnown RBP8.82□□□□□ -1
SDCBP-210ENST00000522843 KIAA1324LA8MWY0 1029 aaPredicted RBP8.81□□□□□ -1
SDCBP-210ENST00000522843 ECE2O60344 883 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 VIL1P09327 827 aaKnown RBP8.81□□□□□ -1
SDCBP-210ENST00000522843 HCLS1P14317 486 aaPredicted RBP8.81□□□□□ -1
SDCBP-210ENST00000522843 MYL6BP14649 208 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 TAL1P17542 331 aaPredicted RBP8.81□□□□□ -1
SDCBP-210ENST00000522843 PRAMEF18Q5VWM3 479 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 KIF6Q6ZMV9 814 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 AGGF1Q8N302 714 aaeCLIP8.81□□□□□ -1
SDCBP-210ENST00000522843 VTI1AQ96AJ9 217 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 TMX4Q9H1E5 349 aaPredicted RBP8.81□□□□□ -1
SDCBP-210ENST00000522843 STOML1Q9UBI4 398 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 OAS3Q9Y6K5 1087 aaKnown RBP8.81□□□□□ -1
SDCBP-210ENST00000522843 KDM3BQ7LBC6 1761 aa8.81□□□□□ -1
SDCBP-210ENST00000522843 CLSPNQ9HAW4 1339 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 H0YGN5 161 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 MMP20O60882 483 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 ZNF280AP59817 542 aaPredicted RBP8.8□□□□□ -1
SDCBP-210ENST00000522843 GPSM2P81274 684 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 PARP10Q53GL7 1025 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 INTS3Q68E01 1043 aaKnown RBP8.8□□□□□ -1
SDCBP-210ENST00000522843 PPP1R42Q7Z4L9 355 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 CMTR1Q8N1G2 835 aaKnown RBP8.8□□□□□ -1
SDCBP-210ENST00000522843 CACTIN-AS1Q8N1I8 211 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 SLC17A8Q8NDX2 589 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 ARMC5Q96C12 935 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 NSUN5Q96P11 429 aaKnown RBP8.8□□□□□ -1
SDCBP-210ENST00000522843 UBL7Q96S82 380 aaPredicted RBP8.8□□□□□ -1
SDCBP-210ENST00000522843 UTP14AQ9BVJ6 771 aaKnown RBP8.8□□□□□ -1
SDCBP-210ENST00000522843 ZMYND15Q9H091 742 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 MUC3BQ9H195 1237 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 TRIM17Q9Y577 477 aa8.8□□□□□ -1
SDCBP-210ENST00000522843 TGFB1P01137 390 aa8.79□□□□□ -1
SDCBP-210ENST00000522843 HOXD8P13378 290 aaPredicted RBP8.79□□□□□ -1
SDCBP-210ENST00000522843 WEE1P30291 646 aa8.79□□□□□ -1
SDCBP-210ENST00000522843 SOX18P35713 384 aa8.79□□□□□ -1
SDCBP-210ENST00000522843 GP2P55259 537 aaKnown RBP8.79□□□□□ -1
SDCBP-210ENST00000522843 CC2D1BQ5T0F9 858 aaKnown RBP8.79□□□□□ -1
SDCBP-210ENST00000522843 RGL4Q8IZJ4 473 aa8.79□□□□□ -1
SDCBP-210ENST00000522843 CELF1Q92879 486 aaKnown RBP8.79□□□□□ -1
SDCBP-210ENST00000522843 THUMPD2Q9BTF0 503 aaKnown RBP8.79□□□□□ -1
SDCBP-210ENST00000522843 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.79□□□□□ -12e-6■■■■■ 96.1
SDCBP-210ENST00000522843 PTPN22Q9Y2R2 807 aa8.79□□□□□ -1
SDCBP-210ENST00000522843 ZNF609O15014 1411 aa8.79□□□□□ -1
SDCBP-210ENST00000522843 DDX60Q8IY21 1712 aaKnown RBP8.78□□□□□ -1
SDCBP-210ENST00000522843 EIF4A1P60842 406 aaKnown RBP8.78□□□□□ -1
SDCBP-210ENST00000522843 PTPN12Q05209 780 aaKnown RBP8.78□□□□□ -1
SDCBP-210ENST00000522843 TAF7Q15545 349 aaPredicted RBP8.78□□□□□ -1
SDCBP-210ENST00000522843 PROSER3Q2NL68 480 aa8.78□□□□□ -1
SDCBP-210ENST00000522843 DDX46Q7L014 1031 aaKnown RBP8.78□□□□□ -1
SDCBP-210ENST00000522843 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.78□□□□□ -1
SDCBP-210ENST00000522843 FAM200AQ8TCP9 573 aa8.78□□□□□ -1
SDCBP-210ENST00000522843 GMLQ99445 158 aa8.78□□□□□ -1
SDCBP-210ENST00000522843 PPME1Q9Y570 386 aa8.78□□□□□ -1
SDCBP-210ENST00000522843 IGF2BP3O00425 579 aaKnown RBP eCLIP8.77□□□□□ -1.01
SDCBP-210ENST00000522843 DHX15O43143 795 aaKnown RBP8.77□□□□□ -1.01
SDCBP-210ENST00000522843 NLRP10Q86W26 655 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 TBC1D16Q8TBP0 767 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 ZNF428Q96B54 188 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 PRO3102Q9H379 93 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 LRFN2Q9ULH4 789 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 TRIM33Q9UPN9 1127 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 KCNMB2Q9Y691 235 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 PSME4Q14997 1843 aa8.77□□□□□ -1.01
SDCBP-210ENST00000522843 PITPNM2Q9BZ72 1349 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms