RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SELENOSQ9BQE4 189 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 FRMD4BQ9Y2L6 1034 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 PSDA5PKW4 1024 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 HAUS3Q68CZ6 603 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 MB21D2Q8IYB1 491 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 POLR1AO95602 1720 aaPredicted RBP12.99□□□□□ -0.33
SYNPO-204ENST00000519664 H7C1D1 291 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 IKBKBO14920 756 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 HGSO14964 777 aaPredicted RBP12.99□□□□□ -0.33
SYNPO-204ENST00000519664 GUCY1A2P33402 732 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 GPBP1Q86WP2 473 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 LMBR1Q8WVP7 490 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 CELF1Q92879 486 aaKnown RBP12.99□□□□□ -0.33
SYNPO-204ENST00000519664 KIFC2Q96AC6 838 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 TUBGCP2Q9BSJ2 902 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 NUP58Q9BVL2 599 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 ABCB4P21439 1286 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 CYP27A1Q02318 531 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 KAZALD1Q96I82 304 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 ADGRL3Q9HAR2 1447 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 DNM2P50570 870 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 TRAF1Q13077 416 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 TBC1D10BQ4KMP7 808 aaPredicted RBP12.99□□□□□ -0.33
SYNPO-204ENST00000519664 KCTD1Q719H9 257 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 SYNCQ9H7C4 482 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 GDAQ9Y2T3 454 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 ATP6V0A2Q9Y487 856 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 LAMC1P11047 1609 aa12.99□□□□□ -0.33
SYNPO-204ENST00000519664 KCNQ2O43526 872 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 EXOC3O60645 756 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 TNNC1P63316 161 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 ASIC2Q16515 512 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 ADAT2Q7Z6V5 191 aaKnown RBP12.98□□□□□ -0.33
SYNPO-204ENST00000519664 GPR161Q8N6U8 529 aaKnown RBP12.98□□□□□ -0.33
SYNPO-204ENST00000519664 TNFAIP3P21580 790 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 UBXN2AP68543 259 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 MICALCLQ6ZW33 695 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 JDP2Q8WYK2 163 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 PIGSQ96S52 555 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 EPC1Q9H2F5 836 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 ZNF609O15014 1411 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 ARHGEF35A5YM69 484 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 DDAH1O94760 285 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 MRPS25P82663 173 aaKnown RBP12.98□□□□□ -0.33
SYNPO-204ENST00000519664 BIRC3Q13489 604 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 MYOCDQ8IZQ8 938 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 TBCKQ8TEA7 893 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 LZTS2Q9BRK4 669 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 PCDHA1Q9Y5I3 950 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 KRT5P13647 590 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 GUCY2FP51841 1108 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 POLR2FP61218 127 aaKnown RBP12.98□□□□□ -0.33
SYNPO-204ENST00000519664 PDIA6Q15084 440 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 GSTA5Q7RTV2 222 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 CCDC155Q8N6L0 562 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 TBC1D22AQ8WUA7 517 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 TEKT1Q969V4 418 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 SENP2Q9HC62 589 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 POLD4Q9HCU8 107 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 DDX41Q9UJV9 622 aaKnown RBP12.98□□□□□ -0.33
SYNPO-204ENST00000519664 SRPRBQ9Y5M8 271 aaKnown RBP12.98□□□□□ -0.33
SYNPO-204ENST00000519664 GJA3Q9Y6H8 435 aa12.98□□□□□ -0.33
SYNPO-204ENST00000519664 NRKQ7Z2Y5 1582 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 SPOPO43791 374 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 CYP2J2P51589 502 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 RABL6Q3YEC7 729 aaPredicted RBP12.97□□□□□ -0.33
SYNPO-204ENST00000519664 GJA10Q969M2 543 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 ISCA1Q9BUE6 129 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 TSGA10Q9BZW7 698 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 KIAA1024Q9UPX6 916 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 AK9Q5TCS8 1911 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 EFCAB8A8MWE9 144 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 ERVV-1B6SEH8 477 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 ERCC5P28715 1186 aaPredicted RBP12.97□□□□□ -0.33
SYNPO-204ENST00000519664 CXCR5P32302 372 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 DDIT3P35638 169 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 PPP1R2P41236 205 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 SFMBT2Q5VUG0 894 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 CPLX4Q7Z7G2 160 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 LARGE2Q8N3Y3 721 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 MRRFQ96E11 262 aaKnown RBP12.97□□□□□ -0.33
SYNPO-204ENST00000519664 LSM14BQ9BX40 385 aaKnown RBP12.97□□□□□ -0.33
SYNPO-204ENST00000519664 GOLGA6CA6NDK9 693 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 GOLGA6BA6NDN3 693 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 SORBS3O60504 671 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 TUBBP07437 444 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 GOLGA6DP0CG33 693 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 LLGL1Q15334 1064 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 VSTM4Q8IW00 320 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 CNOT6LQ96LI5 555 aaKnown RBP12.97□□□□□ -0.33
SYNPO-204ENST00000519664 PLVAPQ9BX97 442 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 EFCC1Q9HA90 598 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 GOLGA6AQ9NYA3 693 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 NEXMIFQ5QGS0 1516 aa12.97□□□□□ -0.33
SYNPO-204ENST00000519664 A0A1W2PRG0 241 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 GSG1L2A8MUP6 293 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 AFAP1L1Q8TED9 768 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 PAGE5Q96GU1 130 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 LY9Q9HBG7 655 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 SPTLC3Q9NUV7 552 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms