RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	SYNRG	Q9UMZ2	1314 aa		18.92	■□□□□ 0.62
LMNA-223	ENST00000515459	MOXD2P	A6NHM9	499 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	MS4A1	P11836	297 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	ZSCAN25	Q6NSZ9	544 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	SYMPK	Q92797	1274 aa	Known RBP	18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	DDX11	Q96FC9	970 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	SLF1	Q9BQI6	1058 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	TEX13B	Q9BXU2	312 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	ARPP21	Q9UBL0	812 aa	Predicted RBP	18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	SYNGAP1	Q96PV0	1343 aa		18.91	■□□□□ 0.62
LMNA-223	ENST00000515459	CHGB	P05060	677 aa		18.9	■□□□□ 0.62
LMNA-223	ENST00000515459	DNAJB2	P25686	324 aa		18.9	■□□□□ 0.62
LMNA-223	ENST00000515459	SNRNP48	Q6IEG0	339 aa	Known RBP	18.9	■□□□□ 0.62
LMNA-223	ENST00000515459	MAMDC4	Q6UXC1	1216 aa		18.9	■□□□□ 0.62
LMNA-223	ENST00000515459	SIRT2	Q8IXJ6	389 aa		18.9	■□□□□ 0.62
LMNA-223	ENST00000515459	KLHDC9	Q8NEP7	349 aa		18.9	■□□□□ 0.62
LMNA-223	ENST00000515459	SNAI1	O95863	264 aa	Predicted RBP	18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	TIMP1	P01033	207 aa		18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	GRIN2C	Q14957	1233 aa		18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	KCNA10	Q16322	511 aa		18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	CCSAP	Q6IQ19	270 aa	Predicted RBP	18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	GLT1D1	Q96MS3	346 aa		18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	NUP88	Q99567	741 aa	Predicted RBP	18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	PUS7L	Q9H0K6	701 aa	Known RBP	18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	ZHX1	Q9UKY1	873 aa	Predicted RBP	18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	MROH7	Q68CQ1	1323 aa		18.89	■□□□□ 0.61
LMNA-223	ENST00000515459	DNAJC25-GNG10	A0A024R161	153 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	DUSP11	O75319	330 aa	Known RBP	18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	PRPF38A	Q8NAV1	312 aa	Known RBP	18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	ZNF576	Q9H609	170 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	PRDM6	Q9NQX0	595 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	NYAP2	Q9P242	653 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	TBX21	Q9UL17	535 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	DDX19B	Q9UMR2	479 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	RIPK3	Q9Y572	518 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	SPTBN5	Q9NRC6	3674 aa	Known RBP	18.88	■□□□□ 0.61
LMNA-223	ENST00000515459	MYH4	Q9Y623	1939 aa		18.88	■□□□□ 0.61
LMNA-223	ENST00000515459		F5H6K3	240 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	ATP2A1	O14983	1001 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	ELP1	O95163	1332 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	CST5	P28325	142 aa	Predicted RBP	18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	SLC4A3	P48751	1232 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	KLRC3	Q07444	240 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	MFSD5	Q6N075	450 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	ZNF467	Q7Z7K2	595 aa	Predicted RBP	18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	CPXCR1	Q8N123	301 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	PCSK9	Q8NBP7	692 aa	Known RBP	18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.87	■□□□□ 0.61	2e-12	■■■■□ 22.3
LMNA-223	ENST00000515459	MKNK2	Q9HBH9	465 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	SPC25	Q9HBM1	224 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	ZBTB40	Q9NUA8	1239 aa		18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	CTDP1	Q9Y5B0	961 aa	Predicted RBP	18.87	■□□□□ 0.61
LMNA-223	ENST00000515459	MYADML2	A6NDP7	307 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	ZBED4	O75132	1171 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	C6orf222	P0C671	652 aa	Predicted RBP	18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	RASA1	P20936	1047 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	ACVR2B	Q13705	512 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	SBK1	Q52WX2	424 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	CCDC174	Q6PII3	467 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	TIFA	Q96CG3	184 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	PRUNE2	Q8WUY3	3088 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	MCM3AP	O60318	1980 aa		18.86	■□□□□ 0.61
LMNA-223	ENST00000515459	NDUFB10	O96000	172 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	ASGR1	P07306	291 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	CDK7	P50613	346 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	PPIG	Q13427	754 aa	Known RBP eCLIP	18.85	■□□□□ 0.61	3e-17	■■□□□ 12
LMNA-223	ENST00000515459	STK11IP	Q8N1F8	1099 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	VTI1A	Q96AJ9	217 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	STRBP	Q96SI9	672 aa	Known RBP	18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	ABHD16B	Q9H3Z7	469 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	COG6	Q9Y2V7	657 aa		18.85	■□□□□ 0.61
LMNA-223	ENST00000515459	GJA9	P57773	515 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	CCDC144B	Q3MJ40	725 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	TJAP1	Q5JTD0	557 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	GIMAP6	Q6P9H5	292 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	ANKRD35	Q8N283	1001 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	USP38	Q8NB14	1042 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	KIFC2	Q96AC6	838 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	CHMP4B	Q9H444	224 aa	Known RBP	18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	RAVER2	Q9HCJ3	691 aa	Known RBP	18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	CLIP2	Q9UDT6	1046 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459	FBXO40	Q9UH90	709 aa		18.84	■□□□□ 0.61
LMNA-223	ENST00000515459		A0A0U1RQG5	324 aa	Predicted RBP	18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	GSG1L2	A8MUP6	293 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	MINDY4B	A8MYZ0	360 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	ADCY6	O43306	1168 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	IRX5	P78411	483 aa	Predicted RBP	18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	GNAS	Q5JWF2	1037 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	TMEM240	Q5SV17	173 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	CCDC129	Q6ZRS4	1044 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	C16orf59	Q7L2K0	433 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	TMEM199	Q8N511	208 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	LRRCC1	Q9C099	1032 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	UPF3A	Q9H1J1	476 aa	Known RBP	18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	SLC38A10	Q9HBR0	1119 aa		18.83	■□□□□ 0.6
LMNA-223	ENST00000515459	ARVCF	O00192	962 aa		18.82	■□□□□ 0.6
LMNA-223	ENST00000515459	TLR3	O15455	904 aa	Known RBP	18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms