RNA–Protein interactions for RNA: ENST00000509389.5

HMGCL-208, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 1 (best)

Gene HMGCL, Length 1,379 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-208ENST00000509389 NDUFB10O96000 172 aa17.34■□□□□ 0.37
HMGCL-208ENST00000509389 MYCNP04198 464 aaPredicted RBP17.34■□□□□ 0.37
HMGCL-208ENST00000509389 SDSP20132 328 aa17.34■□□□□ 0.37
HMGCL-208ENST00000509389 COPB2P35606 906 aa17.34■□□□□ 0.37
HMGCL-208ENST00000509389 LRRFIP1Q32MZ4 808 aaKnown RBP17.34■□□□□ 0.37
HMGCL-208ENST00000509389 SLC39A5Q6ZMH5 540 aa17.34■□□□□ 0.37
HMGCL-208ENST00000509389 IFNL3Q8IZI9 196 aa17.34■□□□□ 0.37
HMGCL-208ENST00000509389 ZNF444Q8N0Y2 327 aaPredicted RBP17.34■□□□□ 0.37
HMGCL-208ENST00000509389 SEC62Q99442 399 aaKnown RBP17.34■□□□□ 0.37
HMGCL-208ENST00000509389 CLIP2Q9UDT6 1046 aa17.34■□□□□ 0.37
HMGCL-208ENST00000509389 DIS3Q9Y2L1 958 aaKnown RBP17.34■□□□□ 0.37
HMGCL-208ENST00000509389 ERC2O15083 957 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 LRRC41Q15345 812 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 FAM47AQ5JRC9 791 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 TINF2Q9BSI4 451 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 ZNF287Q9HBT7 754 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 NRBP1Q9UHY1 535 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 ATP11BQ9Y2G3 1177 aa17.33■□□□□ 0.36
HMGCL-208ENST00000509389 ADCYAP1R1P41586 468 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 PRPF38AQ8NAV1 312 aaKnown RBP17.32■□□□□ 0.36
HMGCL-208ENST00000509389 MKL1Q969V6 931 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 CEP95Q96GE4 821 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 LBHD1Q9BQE6 289 aaPredicted RBP17.32■□□□□ 0.36
HMGCL-208ENST00000509389 TEX13BQ9BXU2 312 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 MTMR4Q9NYA4 1195 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 RIPK3Q9Y572 518 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 LTBP2Q14767 1821 aa17.32■□□□□ 0.36
HMGCL-208ENST00000509389 CDC45O75419 566 aa17.31■□□□□ 0.36
HMGCL-208ENST00000509389 TAL1P17542 331 aaPredicted RBP17.31■□□□□ 0.36
HMGCL-208ENST00000509389 SNRNP48Q6IEG0 339 aaKnown RBP17.31■□□□□ 0.36
HMGCL-208ENST00000509389 DEFB123Q8N688 67 aa17.31■□□□□ 0.36
HMGCL-208ENST00000509389 FERMT2Q96AC1 680 aa17.31■□□□□ 0.36
HMGCL-208ENST00000509389 FSD1Q9BTV5 496 aa17.31■□□□□ 0.36
HMGCL-208ENST00000509389 NACAP1Q9BZK3 213 aa17.31■□□□□ 0.36
HMGCL-208ENST00000509389 PRKAG2Q9UGJ0 569 aa17.31■□□□□ 0.36
HMGCL-208ENST00000509389 ZNF865P0CJ78 1059 aaPredicted RBP17.3■□□□□ 0.36
HMGCL-208ENST00000509389 RARBP10826 455 aa17.3■□□□□ 0.36
HMGCL-208ENST00000509389 SNX17Q15036 470 aa17.3■□□□□ 0.36
HMGCL-208ENST00000509389 TRIM60Q495X7 471 aa17.3■□□□□ 0.36
HMGCL-208ENST00000509389 ZMYM1Q5SVZ6 1142 aa17.3■□□□□ 0.36
HMGCL-208ENST00000509389 Q7L0L9 218 aa17.3■□□□□ 0.36
HMGCL-208ENST00000509389 XPNPEP3Q9NQH7 507 aa17.3■□□□□ 0.36
HMGCL-208ENST00000509389 ATP2A1O14983 1001 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 ZBED4O75132 1171 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 TTLL1O95922 423 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 SLC4A3P48751 1232 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 CPXCR1Q8N123 301 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 LRRC47Q8N1G4 583 aaKnown RBP17.29■□□□□ 0.36
HMGCL-208ENST00000509389 NEDD1Q8NHV4 660 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 KIFC2Q96AC6 838 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 FEM1BQ9UK73 627 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 SYNPO2Q9UMS6 1093 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 PHF24Q9UPV7 400 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 PLIN4Q96Q06 1357 aa17.29■□□□□ 0.36
HMGCL-208ENST00000509389 DNAJC25-GNG10A0A024R161 153 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 PGK1P00558 417 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 TSPY3P0CV98 308 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 TSPY8P0CW00 308 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 PDE4BQ07343 736 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 PPARAQ07869 468 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 TICAM2Q86XR7 235 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 GMCL1P1Q8NEA9 526 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 DDX11Q96FC9 970 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 NAPBQ9H115 298 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 SLC38A10Q9HBR0 1119 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 RAVER2Q9HCJ3 691 aaKnown RBP17.28■□□□□ 0.36
HMGCL-208ENST00000509389 CNPY2Q9Y2B0 182 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 CTDP1Q9Y5B0 961 aaPredicted RBP17.28■□□□□ 0.36
HMGCL-208ENST00000509389 SLC3A2P08195 630 aaKnown RBP17.28■□□□□ 0.36
HMGCL-208ENST00000509389 AKR1A1P14550 325 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 TFAP4Q01664 338 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 C1orf53Q5VUE5 145 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 SLFN13Q68D06 897 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 RNF180Q86T96 592 aa17.28■□□□□ 0.36
HMGCL-208ENST00000509389 MSL3Q8N5Y2 521 aaKnown RBP17.28■□□□□ 0.36
HMGCL-208ENST00000509389 LENG1Q96BZ8 264 aaPredicted RBP17.28■□□□□ 0.36
HMGCL-208ENST00000509389 PRDM5Q9NQX1 630 aaPredicted RBP17.28■□□□□ 0.36
HMGCL-208ENST00000509389 FOXP2O15409 715 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 SEC24BO95487 1268 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 SNAI1O95863 264 aaPredicted RBP17.27■□□□□ 0.35
HMGCL-208ENST00000509389 MAMDC4Q6UXC1 1216 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 CCDC129Q6ZRS4 1044 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 SH3RF1Q7Z6J0 888 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 SLC17A8Q8NDX2 589 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 PDLIM7Q9NR12 457 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 MTMR10Q9NXD2 777 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 SYNGAP1Q96PV0 1343 aa17.27■□□□□ 0.35
HMGCL-208ENST00000509389 MCM3APO60318 1980 aa17.26■□□□□ 0.35
HMGCL-208ENST00000509389 ADAMTS4O75173 837 aa17.26■□□□□ 0.35
HMGCL-208ENST00000509389 BMP3P12645 472 aa17.26■□□□□ 0.35
HMGCL-208ENST00000509389 TLE2Q04725 743 aa17.26■□□□□ 0.35
HMGCL-208ENST00000509389 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.26■□□□□ 0.35
HMGCL-208ENST00000509389 BADQ92934 168 aa17.26■□□□□ 0.35
HMGCL-208ENST00000509389 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.26■□□□□ 0.35
HMGCL-208ENST00000509389 RBM19Q9Y4C8 960 aaKnown RBP17.26■□□□□ 0.35
HMGCL-208ENST00000509389 COL6A3P12111 3177 aa17.26■□□□□ 0.35
HMGCL-208ENST00000509389 TRIM43BA6NCK2 446 aa17.25■□□□□ 0.35
HMGCL-208ENST00000509389 TMEM232C9JQI7 657 aa17.25■□□□□ 0.35
HMGCL-208ENST00000509389 OAZ1P54368 228 aa17.25■□□□□ 0.35
HMGCL-208ENST00000509389 ZNF467Q7Z7K2 595 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms