RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 SNRNP48Q6IEG0 339 aaKnown RBP15.48■□□□□ 0.07
HMGCS1-205ENST00000508319 PRPF38AQ8NAV1 312 aaKnown RBP15.48■□□□□ 0.07
HMGCS1-205ENST00000508319 NEDD1Q8NHV4 660 aa15.48■□□□□ 0.07
HMGCS1-205ENST00000508319 NRBP1Q9UHY1 535 aa15.48■□□□□ 0.07
HMGCS1-205ENST00000508319 DIS3Q9Y2L1 958 aaKnown RBP15.48■□□□□ 0.07
HMGCS1-205ENST00000508319 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.48■□□□□ 0.07
HMGCS1-205ENST00000508319 SLC3A2P08195 630 aaKnown RBP15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 TSPY3P0CV98 308 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 TSPY8P0CW00 308 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 ATN1P54259 1190 aaPredicted RBP15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 VPS53Q5VIR6 699 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 EVI5LQ96CN4 794 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 LRCH3Q96II8 777 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 TINF2Q9BSI4 451 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 SLC38A10Q9HBR0 1119 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 ZBTB47Q9UFB7 747 aaPredicted RBP15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 RIPK3Q9Y572 518 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 COL6A3P12111 3177 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 MCM3APO60318 1980 aa15.47■□□□□ 0.07
HMGCS1-205ENST00000508319 KBTBD13C9JR72 458 aa15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 TFAP4Q01664 338 aa15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 ARRDC4Q8NCT1 418 aa15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 KIFC2Q96AC6 838 aa15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 YTHDC1Q96MU7 727 aaKnown RBP15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 FEM1BQ9UK73 627 aa15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 TACC3Q9Y6A5 838 aa15.46■□□□□ 0.07
HMGCS1-205ENST00000508319 DNAJC25-GNG10A0A024R161 153 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 BMP3P12645 472 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 TAL1P17542 331 aaPredicted RBP15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 RTP1P59025 263 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 CTDSPL2Q05D32 466 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 SNX17Q15036 470 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 LRRC41Q15345 812 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 SLFN13Q68D06 897 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 TDHQ8IZJ6 230 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 CPXCR1Q8N123 301 aa15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 RAVER2Q9HCJ3 691 aaKnown RBP15.45■□□□□ 0.06
HMGCS1-205ENST00000508319 A0A0D9SFI3 127 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 ZBED4O75132 1171 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 ZNF865P0CJ78 1059 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 OAZ1P54368 228 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 MDM2Q00987 491 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 AAMPQ13685 434 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 SMC5Q8IY18 1101 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 FAM227BQ96M60 508 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 UBE2OQ9C0C9 1292 aaKnown RBP15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 LNPKQ9C0E8 428 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 INCENPQ9NQS7 918 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 IL17RBQ9NRM6 502 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 HELLSQ9NRZ9 838 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 ANAPC4Q9UJX5 808 aa15.44■□□□□ 0.06
HMGCS1-205ENST00000508319 TSPY2A6NKD2 308 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 NMT2O60551 498 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 MYCNP04198 464 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 RARBP10826 455 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 STAT2P52630 851 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 ALX1Q15699 326 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 LRIT3Q3SXY7 679 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 MAMDC4Q6UXC1 1216 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 SLC39A5Q6ZMH5 540 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 RASGRP2Q7LDG7 609 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 ZNF589Q86UQ0 364 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 MSL3Q8N5Y2 521 aaKnown RBP15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 LENG1Q96BZ8 264 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 GMCL1Q96IK5 515 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 FGD4Q96M96 766 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 XPNPEP3Q9NQH7 507 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 LRRC37A2A6NM11 1700 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 SYNGAP1Q96PV0 1343 aa15.43■□□□□ 0.06
HMGCS1-205ENST00000508319 TMEM232C9JQI7 657 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 ORC4O43929 436 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 FGRP09769 529 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 AKR1A1P14550 325 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 ADCYAP1R1P41586 468 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 SLC1A4P43007 532 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 ZNF467Q7Z7K2 595 aaPredicted RBP15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 TICAM2Q86XR7 235 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 CHST13Q8NET6 341 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 DDX11Q96FC9 970 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 STX8Q9UNK0 236 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 PHF24Q9UPV7 400 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 CNPY2Q9Y2B0 182 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 ATP11BQ9Y2G3 1177 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 CTDP1Q9Y5B0 961 aaPredicted RBP15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 LAMA4Q16363 1823 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 ZNF536O15090 1300 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 ZMYM6O95789 1325 aa15.42■□□□□ 0.06
HMGCS1-205ENST00000508319 LCTP09848 1927 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 ADAMTS4O75173 837 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 SNAI1O95863 264 aaPredicted RBP15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 PGK1P00558 417 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 MCCP23508 829 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 NOVP48745 357 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 SLC4A3P48751 1232 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 NMIQ13287 307 aaPredicted RBP15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 TRIM60Q495X7 471 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 MCMDC2Q4G0Z9 681 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 PPP4R3BQ5MIZ7 849 aa15.41■□□□□ 0.06
HMGCS1-205ENST00000508319 C1orf53Q5VUE5 145 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms