RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 ABI1Q8IZP0 508 aa6.66□□□□□ -1.34
CSMD3-208ENST00000497026 FAM181AQ8N9Y4 354 aa6.66□□□□□ -1.34
CSMD3-208ENST00000497026 KCNH5Q8NCM2 988 aa6.66□□□□□ -1.34
CSMD3-208ENST00000497026 YTHDC1Q96MU7 727 aaKnown RBP6.66□□□□□ -1.34
CSMD3-208ENST00000497026 CCDC9Q9Y3X0 531 aaKnown RBP6.66□□□□□ -1.34
CSMD3-208ENST00000497026 SYNGAP1Q96PV0 1343 aa6.66□□□□□ -1.34
CSMD3-208ENST00000497026 TNS1Q9HBL0 1735 aaKnown RBP6.65□□□□□ -1.34
CSMD3-208ENST00000497026 CRB1P82279 1406 aa6.65□□□□□ -1.34
CSMD3-208ENST00000497026 NSD3Q9BZ95 1437 aa6.65□□□□□ -1.34
CSMD3-208ENST00000497026 ZBTB7CA1YPR0 619 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 DCDC2CA8MYV0 355 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 FYB1O15117 783 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 LEFTY1O75610 366 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 CELA3AP09093 270 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 USP17L7P0C7H9 530 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 CYP27A1Q02318 531 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 ZNF252P-AS1Q0IIN9 211 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 CPSF6Q16630 551 aaKnown RBP eCLIP6.65□□□□□ -1.35
CSMD3-208ENST00000497026 PPM1JQ5JR12 505 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 NFXL1Q6ZNB6 911 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 ISL2Q96A47 359 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 EMILIN2Q9BXX0 1053 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 FAM208AQ9UK61 1670 aaKnown RBP6.65□□□□□ -1.35
CSMD3-208ENST00000497026 RGPD2P0DJD1 1756 aa6.65□□□□□ -1.35
CSMD3-208ENST00000497026 FBLN1P23142 703 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 ZC3H12AQ5D1E8 599 aaKnown RBP6.64□□□□□ -1.35
CSMD3-208ENST00000497026 C12orf40Q86WS4 652 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 C12orf49Q9H741 205 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 USP35Q9P2H5 1018 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 SPG7Q9UQ90 795 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 WDR17Q8IZU2 1322 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 DISP2A7MBM2 1401 aa6.64□□□□□ -1.35
CSMD3-208ENST00000497026 RGPD1P0DJD0 1748 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 EVA1CP58658 441 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 KRT27Q7Z3Y8 459 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 UBE3DQ7Z6J8 389 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.63□□□□□ -1.35
CSMD3-208ENST00000497026 TP53INP2Q8IXH6 220 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 FLCNQ8NFG4 579 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 CEP44Q9C0F1 390 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 SRCIN1Q9C0H9 1055 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 PICK1Q9NRD5 415 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 BSDC1Q9NW68 430 aaPredicted RBP6.63□□□□□ -1.35
CSMD3-208ENST00000497026 PCOLCE2Q9UKZ9 415 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 SUPT16HQ9Y5B9 1047 aaKnown RBP6.63□□□□□ -1.35
CSMD3-208ENST00000497026 U3KQE9 123 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 MAP3K19Q56UN5 1328 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 BLMP54132 1417 aaPredicted RBP6.63□□□□□ -1.35
CSMD3-208ENST00000497026 SBF2Q86WG5 1849 aa6.63□□□□□ -1.35
CSMD3-208ENST00000497026 HNRNPUQ00839 825 aaKnown RBP eCLIP6.62□□□□□ -1.35
CSMD3-208ENST00000497026 LLGL2Q6P1M3 1020 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 ZNF574Q6ZN55 896 aaPredicted RBP6.62□□□□□ -1.35
CSMD3-208ENST00000497026 VSIG10LQ86VR7 867 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 TCP11L2Q8N4U5 519 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 COG3Q96JB2 828 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 ADGRE2Q9UHX3 823 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 TTF2Q9UNY4 1162 aaKnown RBP6.62□□□□□ -1.35
CSMD3-208ENST00000497026 THRAP3Q9Y2W1 955 aaKnown RBP6.62□□□□□ -1.35
CSMD3-208ENST00000497026 KIF7Q2M1P5 1343 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 SHANK3Q9BYB0 1731 aa6.62□□□□□ -1.35
CSMD3-208ENST00000497026 MAP2P11137 1827 aaKnown RBP6.62□□□□□ -1.35
CSMD3-208ENST00000497026 GIPC1O14908 333 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 PTPN11Q06124 597 aaPredicted RBP6.61□□□□□ -1.35
CSMD3-208ENST00000497026 BNIP3Q12983 259 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 CYP27C1Q4G0S4 372 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 PCNX4Q63HM2 1172 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 TOM1L2Q6ZVM7 507 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 PLD6Q8N2A8 252 aaKnown RBP6.61□□□□□ -1.35
CSMD3-208ENST00000497026 TOP6BLQ8N6T0 577 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 RNF214Q8ND24 703 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 POLR3GLQ9BT43 218 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 FAM8A1Q9UBU6 413 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 PPM1HQ9ULR3 514 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 PCDHA4Q9UN74 947 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 SAMM50Q9Y512 469 aa6.61□□□□□ -1.35
CSMD3-208ENST00000497026 RTL1A6NKG5 1358 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 ANKRD33BA6NCL7 494 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 PRNPP04156 253 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 HOXC9P31274 260 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 ERVK-24P63145 666 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 COL19A1Q14993 1142 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 RRS1Q15050 365 aaKnown RBP6.6□□□□□ -1.35
CSMD3-208ENST00000497026 IP6K1Q92551 441 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 DUSP9Q99956 384 aaKnown RBP6.6□□□□□ -1.35
CSMD3-208ENST00000497026 DUSP23Q9BVJ7 150 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 TNS2Q63HR2 1409 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 CCDC7Q96M83 1385 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 CGNL1Q0VF96 1302 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 WASHC2AQ641Q2 1341 aa6.6□□□□□ -1.35
CSMD3-208ENST00000497026 TRIM37O94972 964 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 PDIA4P13667 645 aaKnown RBP6.59□□□□□ -1.35
CSMD3-208ENST00000497026 JAG1P78504 1218 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 INPP5AQ14642 412 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 SPRED2Q7Z698 418 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 ANKRD24Q8TF21 1146 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 PANK3Q9H999 370 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 PAK6Q9NQU5 681 aaPredicted RBP6.59□□□□□ -1.35
CSMD3-208ENST00000497026 CACNA2D2Q9NY47 1150 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 RREB1Q92766 1687 aa6.59□□□□□ -1.35
CSMD3-208ENST00000497026 SMG6Q86US8 1419 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms