RNA–Protein interactions for RNA: ENST00000495040.1

PLXNA3-208, Transcript of plexin A3, human

TSL 5

Gene PLXNA3, Length 421 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PLXNA3-208	ENST00000495040	PLXNA1	Q9UIW2	1896 aa		31.58	■■■□□ 2.65
PLXNA3-208	ENST00000495040	ATP2A1	O14983	1001 aa		31.57	■■■□□ 2.64
PLXNA3-208	ENST00000495040	BMP3	P12645	472 aa		31.57	■■■□□ 2.64
PLXNA3-208	ENST00000495040	SNRNP48	Q6IEG0	339 aa	Known RBP	31.57	■■■□□ 2.64
PLXNA3-208	ENST00000495040	C7orf61	Q8IZ16	206 aa		31.57	■■■□□ 2.64
PLXNA3-208	ENST00000495040	KIFC2	Q96AC6	838 aa		31.57	■■■□□ 2.64
PLXNA3-208	ENST00000495040	DIS3	Q9Y2L1	958 aa	Known RBP	31.57	■■■□□ 2.64
PLXNA3-208	ENST00000495040	FGA	P02671	866 aa		31.56	■■■□□ 2.64
PLXNA3-208	ENST00000495040	HSPD1	P10809	573 aa	Known RBP	31.56	■■■□□ 2.64
PLXNA3-208	ENST00000495040	INCENP	Q9NQS7	918 aa		31.56	■■■□□ 2.64
PLXNA3-208	ENST00000495040	RBM27	Q9P2N5	1060 aa	Known RBP	31.56	■■■□□ 2.64
PLXNA3-208	ENST00000495040	STX8	Q9UNK0	236 aa		31.56	■■■□□ 2.64
PLXNA3-208	ENST00000495040	SEPT4	O43236	478 aa		31.55	■■■□□ 2.64
PLXNA3-208	ENST00000495040	ORC4	O43929	436 aa		31.55	■■■□□ 2.64
PLXNA3-208	ENST00000495040	PGK2	P07205	417 aa		31.55	■■■□□ 2.64
PLXNA3-208	ENST00000495040	FGR	P09769	529 aa		31.55	■■■□□ 2.64
PLXNA3-208	ENST00000495040	GMCL1	Q96IK5	515 aa		31.55	■■■□□ 2.64
PLXNA3-208	ENST00000495040	SLC38A10	Q9HBR0	1119 aa		31.55	■■■□□ 2.64
PLXNA3-208	ENST00000495040	ZMYM6	O95789	1325 aa		31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	CCDC171	Q6TFL3	1326 aa		31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	RANBP6	O60518	1105 aa	Known RBP	31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	FXR1	P51114	621 aa	Known RBP eCLIP	31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	ZNF792	Q3KQV3	632 aa		31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	ZNF589	Q86UQ0	364 aa	Predicted RBP	31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	CPXCR1	Q8N123	301 aa		31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	PRO3102	Q9H379	93 aa		31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	NRBP1	Q9UHY1	535 aa		31.54	■■■□□ 2.64
PLXNA3-208	ENST00000495040	FDX1	P10109	184 aa		31.53	■■■□□ 2.64
PLXNA3-208	ENST00000495040	SDS	P20132	328 aa		31.53	■■■□□ 2.64
PLXNA3-208	ENST00000495040	MFAP1	P55081	439 aa	Known RBP	31.53	■■■□□ 2.64
PLXNA3-208	ENST00000495040	IL17RB	Q9NRM6	502 aa		31.53	■■■□□ 2.64
PLXNA3-208	ENST00000495040	RIPK3	Q9Y572	518 aa		31.53	■■■□□ 2.64
PLXNA3-208	ENST00000495040	TACC3	Q9Y6A5	838 aa		31.53	■■■□□ 2.64
PLXNA3-208	ENST00000495040	TMEM232	C9JQI7	657 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	SLC1A4	P43007	532 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	STAT2	P52630	851 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	OAZ1	P54368	228 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	PRAMEF19	Q5SWL8	479 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	CHURC1	Q8WUH1	139 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	TINF2	Q9BSI4	451 aa		31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	RAVER2	Q9HCJ3	691 aa	Known RBP	31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	ISY1	Q9ULR0	285 aa	Known RBP	31.52	■■■□□ 2.64
PLXNA3-208	ENST00000495040	DNM1L	O00429	736 aa		31.51	■■■□□ 2.63
PLXNA3-208	ENST00000495040	SLC4A3	P48751	1232 aa		31.51	■■■□□ 2.63
PLXNA3-208	ENST00000495040	FAM160B2	Q86V87	743 aa		31.51	■■■□□ 2.63
PLXNA3-208	ENST00000495040	ARRDC4	Q8NCT1	418 aa		31.51	■■■□□ 2.63
PLXNA3-208	ENST00000495040	DDX11	Q96FC9	970 aa		31.51	■■■□□ 2.63
PLXNA3-208	ENST00000495040	TOMM22	Q9NS69	142 aa		31.51	■■■□□ 2.63
PLXNA3-208	ENST00000495040	SMCHD1	A6NHR9	2005 aa		31.5	■■■□□ 2.63
PLXNA3-208	ENST00000495040	NMT2	O60551	498 aa		31.5	■■■□□ 2.63
PLXNA3-208	ENST00000495040	MCC	P23508	829 aa		31.5	■■■□□ 2.63
PLXNA3-208	ENST00000495040	STAG1	Q8WVM7	1258 aa		31.5	■■■□□ 2.63
PLXNA3-208	ENST00000495040	SENP6	Q9GZR1	1112 aa	Predicted RBP	31.5	■■■□□ 2.63
PLXNA3-208	ENST00000495040	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	31.5	■■■□□ 2.63
PLXNA3-208	ENST00000495040	NOV	P48745	357 aa		31.49	■■■□□ 2.63
PLXNA3-208	ENST00000495040	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	31.49	■■■□□ 2.63	2e-6	■□□□□ 9.5
PLXNA3-208	ENST00000495040	FBXO40	Q9UH90	709 aa		31.49	■■■□□ 2.63
PLXNA3-208	ENST00000495040	RANBP2	P49792	3224 aa	Known RBP	31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	PLA2G6	O60733	806 aa		31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	IK	Q13123	557 aa	Predicted RBP	31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	LRRC26	Q2I0M4	334 aa		31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	RRP12	Q5JTH9	1297 aa	Known RBP	31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	ANO1	Q5XXA6	986 aa		31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	RCSD1	Q6JBY9	416 aa		31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	MSL3	Q8N5Y2	521 aa	Known RBP	31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040	CHST13	Q8NET6	341 aa		31.48	■■■□□ 2.63
PLXNA3-208	ENST00000495040		A0A1W2PPC1	479 aa		31.47	■■■□□ 2.63
PLXNA3-208	ENST00000495040	HIP1	O00291	1037 aa		31.47	■■■□□ 2.63
PLXNA3-208	ENST00000495040	PC	P11498	1178 aa	Known RBP	31.47	■■■□□ 2.63
PLXNA3-208	ENST00000495040	DIAPH3	Q9NSV4	1193 aa		31.47	■■■□□ 2.63
PLXNA3-208	ENST00000495040	DNAJC25-GNG10	A0A024R161	153 aa		31.46	■■■□□ 2.63
PLXNA3-208	ENST00000495040	HAND2	P61296	217 aa		31.46	■■■□□ 2.63
PLXNA3-208	ENST00000495040	GJC2	Q5T442	439 aa	Predicted RBP	31.46	■■■□□ 2.63
PLXNA3-208	ENST00000495040	TCP11L1	Q9NUJ3	509 aa		31.46	■■■□□ 2.63
PLXNA3-208	ENST00000495040	KBTBD13	C9JR72	458 aa		31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	CWC27	Q6UX04	472 aa	Known RBP	31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	KCTD1	Q719H9	257 aa		31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	ANKRD35	Q8N283	1001 aa		31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	CHMP4C	Q96CF2	233 aa		31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	PCDH10	Q9P2E7	1040 aa		31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	CNPY2	Q9Y2B0	182 aa		31.45	■■■□□ 2.63
PLXNA3-208	ENST00000495040	SYN1	P17600	705 aa		31.44	■■■□□ 2.62
PLXNA3-208	ENST00000495040	AKNAD1	Q5T1N1	836 aa		31.44	■■■□□ 2.62
PLXNA3-208	ENST00000495040	MFSD6	Q6ZSS7	791 aa		31.44	■■■□□ 2.62
PLXNA3-208	ENST00000495040	DCAF4	Q8WV16	495 aa		31.44	■■■□□ 2.62
PLXNA3-208	ENST00000495040	GDF15	Q99988	308 aa		31.44	■■■□□ 2.62
PLXNA3-208	ENST00000495040	SYNGAP1	Q96PV0	1343 aa		31.44	■■■□□ 2.62
PLXNA3-208	ENST00000495040	RARB	P10826	455 aa		31.43	■■■□□ 2.62
PLXNA3-208	ENST00000495040	MAMDC4	Q6UXC1	1216 aa		31.43	■■■□□ 2.62
PLXNA3-208	ENST00000495040	ZNF467	Q7Z7K2	595 aa	Predicted RBP	31.43	■■■□□ 2.62
PLXNA3-208	ENST00000495040	RNF41	Q9H4P4	317 aa	Predicted RBP	31.43	■■■□□ 2.62
PLXNA3-208	ENST00000495040	ZNF865	P0CJ78	1059 aa	Predicted RBP	31.42	■■■□□ 2.62
PLXNA3-208	ENST00000495040	TOP1	P11387	765 aa	Known RBP	31.42	■■■□□ 2.62
PLXNA3-208	ENST00000495040	TAL1	P17542	331 aa	Predicted RBP	31.42	■■■□□ 2.62
PLXNA3-208	ENST00000495040	BMP8B	P34820	402 aa		31.42	■■■□□ 2.62
PLXNA3-208	ENST00000495040	MTMR7	Q9Y216	660 aa		31.42	■■■□□ 2.62
PLXNA3-208	ENST00000495040	MYCN	P04198	464 aa	Predicted RBP	31.41	■■■□□ 2.62
PLXNA3-208	ENST00000495040	AKR1A1	P14550	325 aa		31.41	■■■□□ 2.62
PLXNA3-208	ENST00000495040	LRRC41	Q15345	812 aa		31.41	■■■□□ 2.62
PLXNA3-208	ENST00000495040	TKFC	Q3LXA3	575 aa		31.41	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms